ViewGene
Locus Name:
GeneID:
Location:

GeneID:520
TrivialName: PA14_73410
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_73410
PAO1 Ortholog Locus:PA5568
Sequence Length:1737
Protein Length:578
Start: 6536808
Stop: 6535072
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08953.1|AE004968_7 (AE004968) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 577/578 (99%), Positives = 577/578 (99%)
Sequence:
ATGGACATTCAACGCTCGATTCTCATCGTCGCCCTTGCAGTCGTGTCCTACCTGCTGGTTCTCCAGTGGAAC
AAGGATTACGGTCAGCCTGAGCTGCCCGCCGCCAGCGCTTCGATGAACACCACGCAAGGCCTGCCGGACACT
CCGTCCGCCTCGGGCACCAGCAGTGACGTTCCCACTGCCCAGAGCAGCGCGGCCGGCAGCGAAGCCGCCGAC
AAGCCGGTTGCGGTCAGCGACAAGCTGATCCAGGTGAAGACCGACGTCCTCGACCTGGCCATCGATCCCCGT
GGCGGCGATATCGTCCAGCTCGGCCTGTTGCAGTATCCGCGCCGCCTGGACCGTCCGGACGTGCCGTTCCCG
CTGTTCGACAACGGTCGCGAACGTACCTACCTGGCGCAGAGCGGCCTCACCGGTGCCGACGGCCCGGACGCC
AGCAGCGCCGGCCGCCCGCTGTTCCACAGTGCGCAAAGCAGCTACCAGTTGGCCGACGGCCAGAACGAACTG
GTCGTGGACCTGAGCTTCAGCCACGACGGTGTCAACTACATCAAGCGCTTCACCTTCCACCGTGGCCTGAAA
GCCGATTGCTCGGACAAGGAAAAGGCCCAGAAGAAGATCGAGTGCATCAATGAAAACGCCTATCAGGTCGGC
GTCAGCTACCTGATCGACAACCAGAGCGGCAAGACCTGGAGCGGCAACCTGTTCGCCCAGCTCAAGCGCGAC
GGTAGCGCCGACCCGTCCTCGACCACCGCCACCGGGGTGTCCACCTACCTCGGCGCCGCGGTCTGGACCCCG
GATTCGCCGTACAAGAAGATCTCCACCAAGGACATGGACAAGGAACAGTTCAAGGAGTCCGTGCAGGGTGGC
TGGGTCGCCTGGCTGCAACACTATTTCGTGACCGCCTGGGTTCCGACCAAGGGCGAGCAGCACCAGGTCATG
ACCCGCAAGGACGGCCAGGGCAACTACATCGTCGGTTTCACCGGCCCGACCCTGAGCGTTCCGGCGGGTAGC
AAGGTGGAAACCGACCTGACCCTGTATGCCGGCCCGAAACTCCAGAAGCACCTGAAGGAACTCTCCCCGGGC
CTGGAACTGACCGTCGACTACGGTTTCCTCTGGTTCATCGCCCAGCCGATCTTTTGGCTGCTGCAACATATC
CACAGCCTGATCGGCAACTGGGGCTGGTCGATCATCGCCCTGACCGTCCTGATCAAGCTGGCCTTCTTCCCG
TTGTCCGCCGCCAGCTACCGTTCGATGGCGCGCATGCGCGCGGTGTCGCCGAAGATGCAGGCGATCAAGGAA
CAGCACGGCGACGATCGGCAGAAGATGTCCCAGGCGATGATGGAGCTGTACAAGAAGGAGAAGATCAATCCG
CTGGGCGGCTGCCTGCCGATCCTGGTCCAGATGCCGGTCTTCCTCTCCCTCTACTGGGTACTCCTGGAAAGC
GTGGAAATGCGCCAGGCGCCTTGGCTCGGCTGGATCACCGACCTGTCGGTGAAGGATCCGTTCTTCATCCTG
CCGATCGTCATGGGCGGCACCATGCTGATCCAGCAGATGCTCAACCCGACCCCGCCGGACCCGATGCAGGCC
AAGGTGATGAAACTGATGCCGATCATCTTCACCTTCTTCTTCCTCTGGTTCCCAGCCGGTCTGGTGCTGTAC
TGGGTAGTCAACAACTGCCTGTCGATCGCACAGCAGTGGTACATTACCCGCAAGATCGAGGCAGCCGCGAAG
ACCGCCTGA
Translation:
MDIQRSILIVALAVVSYLLVLQWNKDYGQPELPAASASMNTTQGLPDTPSASGTSSDVPTAQSSAAGSEAAD
KPVAVSDKLIQVKTDVLDLAIDPRGGDIVQLGLLQYPRRLDRPDVPFPLFDNGRERTYLAQSGLTGADGPDA
SSAGRPLFHSAQSSYQLADGQNELVVDLSFSHDGVNYIKRFTFHRGLKADCSDKEKAQKKIECINENAYQVG
VSYLIDNQSGKTWSGNLFAQLKRDGSADPSSTTATGVSTYLGAAVWTPDSPYKKISTKDMDKEQFKESVQGG
WVAWLQHYFVTAWVPTKGEQHQVMTRKDGQGNYIVGFTGPTLSVPAGSKVETDLTLYAGPKLQKHLKELSPG
LELTVDYGFLWFIAQPIFWLLQHIHSLIGNWGWSIIALTVLIKLAFFPLSAASYRSMARMRAVSPKMQAIKE
QHGDDRQKMSQAMMELYKKEKINPLGGCLPILVQMPVFLSLYWVLLESVEMRQAPWLGWITDLSVKDPFFIL
PIVMGGTMLIQQMLNPTPPDPMQAKVMKLMPIIFTFFFLWFPAGLVLYWVVNNCLSIAQQWYITRKIEAAAK
TA*
AnnotationID:529GeneID:520
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 09:09:52
Gene Name:
Confidence Code:3
GeneProduct:putative inner membrane protein, 60 kDa
Cell Localization:()
Synonyms:yidC
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0706,pfam02096
Secondary Functional Category(ies):intracellular trafficking and secretion
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65640.1|AE016190_6 (AE016774) inner membrane protein, 60 kDa [Pseudomonas putida
           KT2440]
          Length = 560

 Score =  857 bits (2214), Expect = 0.0
 Identities = 421/581 (72%), Positives = 479/581 (82%), Gaps = 26/581 (4%)

>gb|AAO59025.1| (AE016876) inner membrane protein, 60 kDa [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 562

 Score =  837 bits (2163), Expect = 0.0
 Identities = 413/581 (71%), Positives = 472/581 (81%), Gaps = 24/581 (4%)








 
Structural Features:
COG0706, YidC, Preprotein translocase subunit YidC 
[Intracellular trafficking and secretion]
CD-Length = 314 residues,  95.5% aligned
Score =  298 bits (764), Expect = 1e-81
Identities = 149/302 (49%), Positives = 196/302 (64%), Gaps = 12/302 (3%)

pfam02096, 60KD_IMP, 60Kd inner membrane protein.
CD-Length = 186 residues, 100.0% aligned
Score =  270 bits (691), Expect = 4e-73
Identities = 102/186 (54%), Positives = 145/186 (77%), Gaps = 4/186 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1043




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18185




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33350




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:520_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:520
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
914
                           PA5568_tr
                           translation of PA5568
                           578
                           99.82
                           99.82
                           0
                           3020.0
     

     
     
36919
                           gb|AAG08953.1|AE004968_7
                           (AE004968) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           578
                           99.82
                           99.82
                           0
                           3020.0
     

     
     
36920
                           gb|AAN65640.1|AE016190_6
                           (AE016774) inner membrane protein, 60 kDa [Pseudomonas putida KT2440]
                           583
                           72.21
                           82.16
                           28
                           2233.0
     

     
     
36921
                           emb|CAA44417.1|
                           (X62540) unnamed protein product [Pseudomonas putida]
                           583
                           72.21
                           82.16
                           28
                           2233.0
     

     
     
36922
                           gb|AAO59025.1|
                           (AE016876) inner membrane protein, 60 kDa [Pseudomonas syringae pv. tomato str. DC3000]
                           583
                           70.84
                           80.96
                           26
                           2179.0
     

     






      

          
GC ORFID: 43522How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5568Glimmer Score: 

          
Start: 5800497Stop: 5798761

          
Length: 1737


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5568 translation of PA5568Homolog Bit Score 1167.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene4118 (ORF: BLASTX 837.0), t_PA5568 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACATTCAACGCTCGATTCTCATCGTCGCCCTTGCAGTCGTGTCCTACCTGCTGGTTCTCCAGTGGAAC 
AAGGATTACGGTCAGCCTGAGCTGCCCGCCGCCAGCGCTTCGATGAACACCACGCAAGGCCTGCCGGACACT 
CCGTCCGCCTCGGGCACCAGCAGTGACGTTCCCACTGCCCAGAGCAGCGCGGCCGGCAGCGAAGCCGCCGAC 
AAGCCGGTTGCGGTCAGCGACAAGCTGATCCAGGTGAAGACCGACGTCCTCGACCTGGCCATCGATCCCCGT 
GGCGGCGATATCGTCCAGCTCGGCCTGTTGCAGTATCCGCGCCGCCTGGACCGTCCGGACGTGCCGTTCCCG 
CTGTTCGACAACGGTCGCGAACGTACCTACCTGGCGCAGAGCGGCCTCACCGGTGCCGACGGCCCGGACGCC 
AGCAGCGCCGGCCGCCCGCTGTTCCACAGTGCGCAAAGCAGCTACCAGTTGGCCGACGGCCAGAACGAACTG 
GTCGTGGACCTGAGCTTCAGCCACGACGGTGTCAACTACATCAAGCGCTTCACCTTCCACCGTGGCCTGAAA 
GCCGATTGCTCGGACAAGGAAAAGGCCCAGAAGAAGATCGAGTGCATCAATGAAAACGCCTATCAGGTCGGC 
GTCAGCTACCTGATCGACAACCAGAGCGGCAAGACCTGGAGCGGCAACCTGTTCGCCCAGCTCAAGCGCGAC 
GGTAGCGCCGACCCGTCCTCGACCACCGCCACCGGGGTGTCCACCTACCTCGGCGCCGCGGTCTGGACCCCG 
GATTCGCCGTACAAGAAGATCTCCACCAAGGACATGGACAAGGAACAGTTCAAGGAGTCCGTGCAGGGTGGC 
TGGGTCGCCTGGCTGCAACACTATTTCGTGACCGCCTGGGTTCCGACCAAGGGCGAGCAGCACCAGGTCATG 
ACCCGCAAGGACGGCCAGGGCAACTACATCGTCGGTTTCACCGGCCCGACCCTGAGCGTTCCGGCGGGTAGC 
AAGGTGGAAACCGACCTGACCCTGTATGCCGGCCCGAAACTCCAGAAGCACCTGAAGGAACTCTCCCCGGGC 
CTGGAACTGACCGTCGACTACGGTTTCCTCTGGTTCATCGCCCAGCCGATCTTTTGGCTGCTGCAACATATC 
CACAGCCTGATCGGCAACTGGGGCTGGTCGATCATCGCCCTGACCGTCCTGATCAAGCTGGCCTTCTTCCCG 
TTGTCCGCCGCCAGCTACCGTTCGATGGCGCGCATGCGCGCGGTGTCGCCGAAGATGCAGGCGATCAAGGAA 
CAGCACGGCGACGATCGGCAGAAGATGTCCCAGGCGATGATGGAGCTGTACAAGAAGGAGAAGATCAATCCG 
CTGGGCGGCTGCCTGCCGATCCTGGTCCAGATGCCGGTCTTCCTCTCCCTCTACTGGGTACTCCTGGAAAGC 
GTGGAAATGCGCCAGGCGCCTTGGCTCGGCTGGATCACCGACCTGTCGGTGAAGGATCCGTTCTTCATCCTG 
CCGATCGTCATGGGCGGCACCATGCTGATCCAGCAGATGCTCAACCCGACCCCGCCGGACCCGATGCAGGCC 
AAGGTGATGAAACTGATGCCGATCATCTTCACCTTCTTCTTCCTCTGGTTCCCAGCCGGTCTGGTGCTGTAC 
TGGGTAGTCAACAACTGCCTGTCGATCGCACAGCAGTGGTACATTACCCGCAAGATCGAGGCAGCCGCGAAG 
ACCGCCTGA