ViewGene

Locus Name:
GeneID:
Location:

GeneID:5199
TrivialName: PA14_57020
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57020
PAO1 Ortholog Locus:PA4386
Sequence Length:294
Protein Length:97
Start: 5081022
Stop: 5080729
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07774.1|AE004854_10 (AE004854) GroES protein [Pseudomonas aeruginosa PAO1]
Identities = 97/97 (100%), Positives = 97/97 (100%)
Sequence:
ATGAAGCTTCGTCCTCTGCATGATCGCGTCGTTATCCGTCGCAGCGAGGAAGAGACCAAGACCGCAGGCGGC
ATCGTGCTGCCGGGTTCCGCCGCCGAGAAGCCGAACCGCGGTGAAGTGGTAGCCGTAGGTACCGGTCGTGTA
CTGGACAACGGCGAAGTGCGCGCTCTGGCAGTGAAGGTGGGCGACAAGGTGGTCTTCGGGCCTTACTCCGGC
AGCAACGCCATCAAGGTCGATGGCGAGGAACTGCTGGTGATGGGCGAGTCCGAAATCCTCGCCGTCCTGGAA
GACTGA
Translation:
MKLRPLHDRVVIRRSEEETKTAGGIVLPGSAAEKPNRGEVVAVGTGRVLDNGEVRALAVKVGDKVVFGPYSG
SNAIKVDGEELLVMGESEILAVLED*
AnnotationID:5204GeneID:5199
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 12:12:15
Gene Name:groES
Confidence Code:1
GeneProduct:Hsp10 protein
Cell Localization:()
Synonyms:mopB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(9) Chaperones & heat shock proteins
Alternate Gene Product Name:Chaperonin 10 Kd subunit
Functional Category Confidence Code:5
COGs:pfam00166,COG0234,KOG1641
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAA74153.1| (Y13828) Hsp10 protein [Pseudomonas stutzeri]
          Length = 97

 Score =  178 bits (452), Expect = 5e-45
 Identities = 90/96 (93%), Positives = 94/96 (97%)

>gb|AAO57827.1| (AE016871) chaperonin, 10 kDa [Pseudomonas syringae pv. tomato
          str. DC3000]
          Length = 97

 Score =  178 bits (451), Expect = 6e-45
 Identities = 89/96 (92%), Positives = 94/96 (97%)
Structural Features:
pfam00166, Cpn10, Chaperonin 10 Kd subunit.
CD-Length = 95 residues, 100.0% aligned
Score =  127 bits (320), Expect = 5e-31
Identities = 59/96 (61%), Positives = 76/96 (79%), Gaps = 1/96 (1%)

COG0234, GroS, Co-chaperonin GroES (HSP10) 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 96 residues, 100.0% aligned
Score =  126 bits (318), Expect = 9e-31
Identities = 60/97 (61%), Positives = 77/97 (79%), Gaps = 1/97 (1%)

KOG1641, Mitochondrial chaperonin 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 104 residues,  90.4% aligned
Score = 74.5 bits (183), Expect = 3e-15
Identities = 38/94 (40%), Positives = 56/94 (59%)
Genomic Context:
Comment:
ReferenceID:10398
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17143
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:5199.html
URL:
ReferenceID:27543
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32705
Author/Investigator(s): Fujita M, Amemura A, Aramaki H.
Title: Transcription of the groESL operon in Pseudomonas aeruginosa PAO1.
PubMed: 9673028
MedLine:
Source:
FEMS Microbiol Lett. 1998 Jun 15;163(2):237-42.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9673028
ReferenceID:32706
Author/Investigator(s): Jensen P, Fomsgaard A, Hoiby N, Hindersson P.
Title: Cloning and nucleotide sequence comparison of the groE operon of Pseudomonas aeruginosa and Burkholderia cepacia.
PubMed: 7538307
MedLine:
Source:
APMIS. 1995 Feb;103(2):113-23.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7538307
ReferenceID:32707
Author/Investigator(s): Sipos A, Klocke M, Frosch M.
Title: Cloning and sequencing of the genes coding for the 10- and 60-kDa heat shock proteins from Pseudomonas aeruginosa and mapping of a species-specific epitope.
PubMed: 1715325
MedLine:
Source:
Infect Immun. 1991 Sep;59(9):3219-26.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=1715325
Homologs By Global Alignment
Gene ID:5199

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7609 PA4386_tr translation of PA4386 97 99.99 99.99 0 478.0
194726 gb|AAG07774.1|AE004854_10 (AE004854) GroES protein [Pseudomonas aeruginosa PAO1] 97 99.99 99.99 0 478.0
194727 gb|AAB34345.1| (S77424) GroES [Pseudomonas aeruginosa] 97 99.99 99.99 0 478.0
194728 gb|AAA25829.1| (M63957) heat shock protein [Pseudomonas aeruginosa] 97 99.99 99.99 0 478.0
194729 emb|CAA74153.1| (Y13828) Hsp10 protein [Pseudomonas stutzeri] 97 92.78 96.90 0 450.0
GC ORFID: 48201How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4386Glimmer Score:
Start: 4344698Stop: 4344405
Length: 294
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4386 translation of PA4386Homolog Bit Score 188.0
Other Homologs: psyr_15may02_Scaffold12_revised_gene2055 (ORF: BLASTX 178.0), t_PA4386 (ORF: GLIMMER)
GC ORF Sequence
ATGAAGCTTCGTCCTCTGCATGATCGCGTCGTTATCCGTCGCAGCGAGGAAGAGACCAAGACCGCAGGCGGC
ATCGTGCTGCCGGGTTCCGCCGCCGAGAAGCCGAACCGCGGTGAAGTGGTAGCCGTAGGTACCGGTCGTGTA
CTGGACAACGGCGAAGTGCGCGCTCTGGCAGTGAAGGTGGGCGACAAGGTGGTCTTCGGGCCTTACTCCGGC
AGCAACGCCATCAAGGTCGATGGCGAGGAACTGCTGGTGATGGGCGAGTCCGAAATCCTCGCCGTCCTGGAA
GACTGA