ViewGene

Locus Name:
GeneID:
Location:

GeneID:5198
TrivialName: PA14_09890
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_09890
PAO1 Ortholog Locus:PA4176
Sequence Length:282
Protein Length:93
Start: 849390
Stop: 849671
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07563.1|AE004834_3 (AE004834) peptidyl-prolyl cis-trans isomerase C2 [Pseudomonas aeruginosa PAO1]
Identities = 92/93 (98%), Positives = 93/93 (100%)
Sequence:
ATGGCCCGAGCCACTGCCCGCCACATCCTGGTTTCCAGCGAAGCCAAGTGCAACGAACTGAAAACCGCCATC
GAAGGTGGTGCGGATTTCGCCGAAGTCGCCCGCGAGCATTCCACCTGCCCCTCCGGCCGCGACGGCGGCAAC
CTGGGTTCGTTCGGTCCTGGCCAGATGGTCCGCGAGTTCGACCAGGTGGTCTTCAGCGCGCCGTTGAACGTG
GTCCAGGGCCCGGTGAAGACCCAGTTCGGCTACCACCTGCTGGAAGTCACCAGCCGCCAGGACTGA
Translation:
MARATARHILVSSEAKCNELKTAIEGGADFAEVAREHSTCPSGRDGGNLGSFGPGQMVREFDQVVFSAPLNV
VQGPVKTQFGYHLLEVTSRQD*
AnnotationID:5203GeneID:5198
AnnotatorUID: diggins
Modification Date/Time: 2005-03-31 08:08:19
Gene Name:ppiC2
Confidence Code:2
GeneProduct:peptidyl-prolyl cis-trans isomerase C2
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(9) Chaperones & heat shock proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00639
Secondary Functional Category(ies):posttranslational modification, protein turnover, chaperones
EC Number:5.2.1.8
Status:ACTIVE
Pathway:
Homology:
>gb|AAN68687.1|AE016497_12 (AE016785) peptidyl-prolyl cis-trans isomerase C [Pseudomonas
          putida KT2440]
          Length = 93

 Score =  162 bits (409), Expect = 5e-40
 Identities = 78/93 (83%), Positives = 84/93 (90%)

>gb|AAO56518.1| (AE016866) peptidyl-prolyl cis-trans isomerase C [Pseudomonas
          syringae pv. tomato str. DC3000]
          Length = 93

 Score =  160 bits (405), Expect = 1e-39
 Identities = 77/93 (82%), Positives = 85/93 (91%)

>gb|AAN54884.1|AE015627_2 (AE015627) peptidyl-prolyl cis-trans isomerase C [Shewanella
          oneidensis MR-1]
          Length = 92

 Score =  147 bits (372), Expect = 9e-36
 Identities = 71/91 (78%), Positives = 78/91 (85%)

Structural Features:
pfam00639, Rotamase, PPIC-type PPIASE domain.
CD-Length = 90 residues, 100.0% aligned
Score = 87.7 bits (217), Expect = 3e-19
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 7/90 (7%)
Genomic Context:
Comment:
ReferenceID:10396
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27540
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36908
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:5198_cdd.html
URL:
ReferenceID:37004
Author/Investigator(s): Rahfeld JU, Rucknagel KP, Schelbert B, Ludwig B, Hacker J, Mann K, Fischer G.
Title: Confirmation of the existence of a third family among peptidyl-prolyl cis/trans isomerases. Amino acid sequence and recombinant production of parvulin.
PubMed: 7925971
MedLine:
Source:
FEBS Lett. 1994 Sep 26;352(2):180-4.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=95010704&dopt=Abstract
Homologs By Global Alignment
Gene ID:5198

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7607 PA4176_tr translation of PA4176 93 98.92 99.99 0 477.0
194710 gb|AAG07563.1|AE004834_3 (AE004834) peptidyl-prolyl cis-trans isomerase C2 [Pseudomonas aeruginosa PAO1] 93 98.92 99.99 0 477.0
194711 gb|AAN68687.1|AE016497_12 (AE016785) peptidyl-prolyl cis-trans isomerase C [Pseudomonas putida KT2440] 93 83.87 90.32 0 409.0
194712 gb|AAO56518.1| (AE016866) peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv. tomato str. DC3000] 93 82.79 91.39 0 405.0
194713 gb|AAN54884.1|AE015627_2 (AE015627) peptidyl-prolyl cis-trans isomerase C [Shewanella oneidensis MR-1] 93 76.34 83.87 1 370.0
GC ORFID: 48200How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4176Glimmer Score:
Start: 4104547Stop: 4104266
Length: 282
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4176 translation of PA4176Homolog Bit Score 188.0
Other Homologs: psyr_15may02_Scaffold5_revised_gene6042 (ORF: BLASTX 162.0), t_PA1996 (ORF: BLASTX 110.0), t_PA4176 (ORF: GLIMMER)
GC ORF Sequence
ATGGCCCGAGCCACTGCCCGCCACATCCTGGTTTCCAGCGAAGCCAAGTGCAACGAACTGAAAACCGCCATC
GAAGGTGGTGCGGATTTCGCCGAAGTCGCCCGCGAGCATTCCACCTGCCCCTCCGGCCGCGACGGCGGCAAC
CTGGGTTCGTTCGGTCCTGGCCAGATGGTCCGCGAGTTCGACCAGGTGGTCTTCAGCGCGCCGTTGAACGTG
GTCCAGGGCCCGGTGAAGACCCAGTTCGGCTACCACCTGCTGGAAGTCACCAGCCGCCAGGACTGA