ViewGene
Locus Name:
GeneID:
Location:

GeneID:5197
TrivialName: PA14_24630
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24630
PAO1 Ortholog Locus:PA3051
Sequence Length:282
Protein Length:93
Start: 2153286
Stop: 2153567
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06439.1|AE004730_3 (AE004730) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 92/93 (98%), Positives = 92/93 (98%)
Sequence:
GTGACATTCAACCGCGTGGTTTGTGGCAAGCTGTCGTGGTTCATTCAAGCGGGGGGCTCCATGCCCGGTCTC
ATCATGGATATCGCCCTGTCCGGCGAACGCCTGCAGGCCATCTACGGCGGCAGGGCCAATCGGGTCCTGCTG
CGCAGCCGCGACGGTCGCCGGGTGAACCTGCCGGCCCATCACCTGCGTCCGTTCATCGGCCACGATGGCGTG
CATGGCACGTTCCGCCTCGATTTCAGCGAGGATGGCCGCCTGCTGGCGCTGCAACGCCTCGCCTGA
Translation:
MTFNRVVCGKLSWFIQAGGSMPGLIMDIALSGERLQAIYGGRANRVLLRSRDGRRVNLPAHHLRPFIGHDGV
HGTFRLDFSEDGRLLALQRLA*
AnnotationID:5202GeneID:5197
AnnotatorUID: diggins
Modification Date/Time: 2005-04-12 07:07:33
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA3051
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:15272




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27538




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5197
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7606
                           PA3051_tr
                           translation of PA3051
                           93
                           98.92
                           98.92
                           0
                           478.0
     

     
     
194709
                           gb|AAG06439.1|AE004730_3
                           (AE004730) hypothetical protein PA3051 [Pseudomonas aeruginosa PAO1]
                           93
                           97.84
                           98.92
                           0
                           475.0
     

     






      

          
GC ORFID: 48199How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3051Glimmer Score: 

          
Start: 2800643Stop: 2800362

          
Length: 282


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3051 translation of PA3051Homolog Bit Score 188.0

          
Other Homologs:  t_PA3051 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGACATTCAACCGCGTGGTTTGTGGCAAGCTGTCGTGGTTCATTCAAGCGGGGGGCTCCATGCCCGGTCTC 
ATCATGGATATCGCCCTGTCCGGCGAACGCCTGCAGGCCATCTACGGCGGCAGGGCCAATCGGGTCCTGCTG 
CGCAGCCGCGACGGTCGCCGGGTGAACCTGCCGGCCCATCACCTGCGTCCGTTCATCGGCCACGATGGCGTG 
CATGGCACGTTCCGCCTCGATTTCAGCGAGGATGGCCGCCTGCTGGCGCTGCAACGCCTCGCCTGA