ViewGene
Locus Name:
GeneID:
Location:

GeneID:5196
TrivialName: PA14_51020
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51020
PAO1 Ortholog Locus:PA1029
Sequence Length:288
Protein Length:95
Start: 4533717
Stop: 4533430
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04418.1|AE004535_5 (AE004535) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 95/95 (100%), Positives = 95/95 (100%)
Sequence:
CTGACGCAGCTCGAACTGGCCGGCATCGTCGGCGTCGATCGCAGCGCCATCAGCCGCTGGAAGACCCAGGGC
CTGCGGGTGGACAGCAAGACCGGCGAGCTGGCTCTGCTGCTGGTGCGGGTCTATCGCGCACTGTATGCCCTG
TTCGGCGGGCAGCAGGAGGACATGCGCCACTTCCTGCGCACTCCCAACCATCACCTGGCGGGCGAGCCGCTG
GCACTGATGGGACAGGTGCAGGGCCTGGTTCATGTGCTGGAATACCTCGATGCGATCCGCGGCAAGGTCTGA
Translation:
MTQLELAGIVGVDRSAISRWKTQGLRVDSKTGELALLLVRVYRALYALFGGQQEDMRHFLRTPNHHLAGEPL
ALMGQVQGLVHVLEYLDAIRGKV*
AnnotationID:5201GeneID:5196
AnnotatorUID: danlee
Modification Date/Time: 2004-05-18 17:05:00
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA1029
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:15270




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27536




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5196
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7605
                           PA1029_tr
                           translation of PA1029
                           95
                           98.94
                           99.99
                           0
                           477.0
     

     
     
194708
                           gb|AAG04418.1|AE004535_5
                           (AE004535) hypothetical protein PA1029 [Pseudomonas aeruginosa PAO1]
                           95
                           98.94
                           99.99
                           0
                           478.0
     

     






      

          
GC ORFID: 48198How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1029Glimmer Score: 

          
Start: 420191Stop: 420478

          
Length: 288


          
Start Codon: CTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1029 translation of PA1029Homolog Bit Score 188.0

          
Other Homologs:  t_PA1029 (ORF: GLIMMER)

          
GC ORF Sequence

           
CTGACGCAGCTCGAACTGGCCGGCATCGTCGGCGTCGATCGCAGCGCCATCAGCCGCTGGAAGACCCAGGGC 
CTGCGGGTGGACAGCAAGACCGGCGAGCTGGCTCTGCTGCTGGTGCGGGTCTATCGCGCACTGTATGCCCTG 
TTCGGCGGGCAGCAGGAGGACATGCGCCACTTCCTGCGCACTCCCAACCATCACCTGGCGGGCGAGCCGCTG 
GCACTGATGGGACAGGTGCAGGGCCTGGTTCATGTGCTGGAATACCTCGATGCGATCCGCGGCAAGGTCTGA