ViewGene
Locus Name:
GeneID:
Location:

GeneID:5194
TrivialName: PA14_62030
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_62030
PAO1 Ortholog Locus:
Sequence Length:621
Protein Length:206
Start: 5535195
Stop: 5534575
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAK01492.1| (AF241171) paraquat-inducible protein A [Pseudomonas aeruginosa]
Identities = 185/206 (89%), Positives = 196/206 (95%)
Sequence:
ATGCGCGCGCTTGATGCCGGAATTCTGGTGTGCGGCGAGTGCCACCAGTTGAATCGCGCCGACGGGGACGAG
CATCCGCGTTGCAGCCGCTGCGGTGCGGTGCTGCACGCCCGGCGCCCAAACAGCCTCACGCGCACCTGGGCG
TTGCTGATCACCGCGGCGATCCTCTACATACCCGCCAACCTGCTGCCGATCATGACGGTCAACCTCTTCGGC
AGCGGAATGCCCGCCACCATCATGGAGGGCGTGGTCGAACTGGTGCATGCCGACATGTTCCCCATCGCCATG
GTGGTGTTCGTCGCCAGTATCCTGGTTCCTACTTTCAAACTGGTGGGCATCGCCCTGCTGCTCTATTCGGTG
CAGCGGCACCAGCCGATGTCGGCCCGCCAGCGTATCCTGATGTATCGCTTCATCGAATGGATCGGGCGCTGG
TCGATGCTCGATATCTTCGTCATCGCCATCCTCGTGGCGCTGGTGAATTTCGGCAACCTGGCGAGCATCGAG
GCCAACCTCGGCGCCGCCGCCTTCGCCAGCGTGGTGGTGCTCACCATGCTCGCCGCCGTGACGTTCGACCCC
CGGCTGATCTGGGACAACACCAATCTGGATGACGAGAATGAGTGA
Translation:
MRALDAGILVCGECHQLNRADGDEHPRCSRCGAVLHARRPNSLTRTWALLITAAILYIPANLLPIMTVNLFG
SGMPATIMEGVVELVHADMFPIAMVVFVASILVPTFKLVGIALLLYSVQRHQPMSARQRILMYRFIEWIGRW
SMLDIFVIAILVALVNFGNLASIEANLGAAAFASVVVLTMLAAVTFDPRLIWDNTNLDDENE*
AnnotationID:5199GeneID:5194
AnnotatorUID: danlee
Modification Date/Time: 2006-03-21 13:01:02
Gene Name:
Confidence Code:4
GeneProduct:"paraquat-inducible protein A"-like protein
Cell Localization:(4) Inner membrane protein
Synonyms:
Cell Localization Confidence Code:3
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam04403
Secondary Functional Category(ies):protein secretion/export apparatus
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|84317314|ref|ZP_00965764.1|  COG2995: Uncharacterized paraquat-inducible protein A [Pseudomonas 
aeruginosa C3719]
Length=206

 Score =  394 bits (1012),  Expect = 1e-108, Method: Composition-based stats.
 Identities = 206/206 (100%), Positives = 206/206 (100%), Gaps = 0/206 (0%)

gi|84323399|ref|ZP_00971470.1|  COG2995: Uncharacterized paraquat-inducible protein A [Pseudomonas 
aeruginosa 2192]
Length=206

 Score =  392 bits (1008),  Expect = 3e-108, Method: Composition-based stats.
 Identities = 205/206 (99%), Positives = 205/206 (99%), Gaps = 0/206 (0%)

gi|12698378|gb|AAK01492.1|  paraquat-inducible protein A [Pseudomonas aeruginosa]
Length=237

 Score =  369 bits (947),  Expect = 4e-101, Method: Composition-based stats.
 Identities = 185/206 (89%), Positives = 196/206 (95%), Gaps = 0/206 (0%)








 
Structural Features:
pfam04403, PqiA, Paraquat-inducible protein A.
CD-Length = 207 residues,  99.5% aligned
Score =  228 bits (584), Expect = 2e-61
Identities = 95/206 (46%), Positives = 126/206 (61%), Gaps = 3/206 (1%)






   
Genomic Context:






   
Comment:
ORF present in PAO1 but overlaps with C-terminal portion of PAO1 PA4690 and likely ommitted during annotation.

Similar to paraquat-inducible protein A, PAGI-1(2), GID5184 (PA14_36030):
Identities = 185/206 (89%), Positives = 196/206 (95%)



















    ReferenceID:10388




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27532




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38063




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5194_cdd.html


    		




 
URL:

















    ReferenceID:38139




  
Author/Investigator(s):
        Koh YS, Roe JH.





  
Title:
        Isolation of a novel paraquat-inducible (pqi) gene regulated by the soxRS locus in Escherichia coli.




  
PubMed:
        7751275


MedLine:
        




    
Source:
J Bacteriol. 1995 May;177(10):2673-8.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=7751275









           
Homologs By Global Alignment 

           

       



     
Gene ID:5194
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
194676
                           gb|AAK01492.1|
                           (AF241171) paraquat-inducible protein A [Pseudomonas aeruginosa]
                           237
                           78.05
                           82.70
                           31
                           967.0
     

     
     
194677
                           gb|AAQ60219.1|
                           (AE016919) paraquat-inducible protein A [Chromobacterium violaceum ATCC 12472]
                           207
                           51.20
                           63.28
                           2
                           486.0
     

     
     
194700
                           emb|CAD14132.1|
                           (AL646060) HYPOTHETICAL TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
                           248
                           38.70
                           52.01
                           43
                           425.0
     

     
     
194680
                           emb|CAE43027.1|
                           (BX640419) putative exported protein [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           399
                           23.80
                           32.83
                           194
                           457.0
     

     
     
194681
                           gb|AAG55436.1|AE005285_3
                           (AE005285) paraquat-inducible protein A [Escherichia coli O157:H7 EDL933]
                           420
                           22.14
                           31.19
                           217
                           465.0
     

     






      

          
GC ORFID: 48196How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: psyr_15may02_Scaffold11_revised_gene1863Glimmer Score: 

          
Start: 4798875Stop: 4798255

          
Length: 621


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: psyr_15may02_Scaffold11_revised_gene1863 related to: gi|12698378|gb|AAK01492.1| (AF241171) paraquat-inducible protein A [Pseudomonas aeruginosa]Homolog Bit Score 189.0

          
Other Homologs:  psyr_15may02_Scaffold11_revised_gene1863 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCGCGCTTGATGCCGGAATTCTGGTGTGCGGCGAGTGCCACCAGTTGAATCGCGCCGACGGGGACGAG 
CATCCGCGTTGCAGCCGCTGCGGTGCGGTGCTGCACGCCCGGCGCCCAAACAGCCTCACGCGCACCTGGGCG 
TTGCTGATCACCGCGGCGATCCTCTACATACCCGCCAACCTGCTGCCGATCATGACGGTCAACCTCTTCGGC 
AGCGGAATGCCCGCCACCATCATGGAGGGCGTGGTCGAACTGGTGCATGCCGACATGTTCCCCATCGCCATG 
GTGGTGTTCGTCGCCAGTATCCTGGTTCCTACTTTCAAACTGGTGGGCATCGCCCTGCTGCTCTATTCGGTG 
CAGCGGCACCAGCCGATGTCGGCCCGCCAGCGTATCCTGATGTATCGCTTCATCGAATGGATCGGGCGCTGG 
TCGATGCTCGATATCTTCGTCATCGCCATCCTCGTGGCGCTGGTGAATTTCGGCAACCTGGCGAGCATCGAG 
GCCAACCTCGGCGCCGCCGCCTTCGCCAGCGTGGTGGTGCTCACCATGCTCGCCGCCGTGACGTTCGACCCC 
CGGCTGATCTGGGACAACACCAATCTGGATGACGAGAATGAGTGA