ViewGene
Locus Name:
GeneID:
Location:

GeneID:5192
TrivialName: PA14_72080
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72080
PAO1 Ortholog Locus:PA5462
Sequence Length:294
Protein Length:97
Start: 6424984
Stop: 6425277
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08847.1|AE004959_3 (AE004959) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 96/97 (98%), Positives = 96/97 (98%)
Sequence:
ATGCGTTACCGGTTCTCGTTGTTCTTCTGTTGCCTGCTGGCGCCCGCTGCGCACGCCTTCGATACCACGACG
GCGTTCACCGCGAAGTCTCTTTACGTCACCAGCAAGCTGACCAGCACGCCGTTCGAGAACAAATTGTTACGC
GATGCCCGGGGCGATGCGGCCAGTTTCGTCGCCAGCGATGGCAGCATCCGCGGTGCGCGCCTGGAAGCGGCA
TTGCGCTGGCTGCGTGTCGCGCACCCCGAGCTGGCGGCCAGCGATCAGGAACTGGCCGAAGCAATTCTTGCC
CAATAG
Translation:
MRYRFSLFFCCLLAPAAHAFDTTTAFTAKSLYVTSKLTSTPFENKLLRDARGDAASFVASDGSIRGARLEAA
LRWLRVAHPELAASDQELAEAILAQ*
AnnotationID:5197GeneID:5192
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 05:05:22
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5462
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10384




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27528




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5192
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7603
                           PA5462_tr
                           translation of PA5462
                           97
                           98.96
                           98.96
                           0
                           480.0
     

     
     
194670
                           gb|AAG08847.1|AE004959_3
                           (AE004959) hypothetical protein PA5462 [Pseudomonas aeruginosa PAO1]
                           97
                           98.96
                           98.96
                           0
                           480.0
     

     






      

          
GC ORFID: 48194How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5462Glimmer Score: 

          
Start: 5688673Stop: 5688966

          
Length: 294


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA5462 translation of PA5462Homolog Bit Score 189.0

          
Other Homologs:  t_PA5462 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTTACCGGTTCTCGTTGTTCTTCTGTTGCCTGCTGGCGCCCGCTGCGCACGCCTTCGATACCACGACG 
GCGTTCACCGCGAAGTCTCTTTACGTCACCAGCAAGCTGACCAGCACGCCGTTCGAGAACAAATTGTTACGC 
GATGCCCGGGGCGATGCGGCCAGTTTCGTCGCCAGCGATGGCAGCATCCGCGGTGCGCGCCTGGAAGCGGCA 
TTGCGCTGGCTGCGTGTCGCGCACCCCGAGCTGGCGGCCAGCGATCAGGAACTGGCCGAAGCAATTCTTGCC 
CAATAG