ViewGene
Locus Name:
GeneID:
Location:

GeneID:5190
TrivialName: PA14_24850
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24850
PAO1 Ortholog Locus:PA3033
Sequence Length:279
Protein Length:92
Start: 2171983
Stop: 2172261
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06421.1|AE004728_7 (AE004728) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 90/91 (98%), Positives = 90/91 (98%)
Sequence:
GTGCTACCATCGCCGCGAAACACTGCACAGGTCCTTTCGATGCCCCCGGAATGCCAACTCTTCGGAACCCTC
GGTTGCCACCTCTGCGAAGTCGCGGAGGCGGTGCTGATGCCCTTCGTCGAACATGGCCTGCTGGTCGAACTG
GTGGACATCGCCGACGACGAAGCCTGGGTCGAGCGCTATGGCCTGCGGATCCCGGTGCTGCGCCGCTGCGAC
AATGGCGCCGAGCTGAACTGGCCGTTCGAGGCCGAGCAGGTCGCAGCCTTCCTCAGCCGCTGA
Translation:
MLPSPRNTAQVLSMPPECQLFGTLGCHLCEVAEAVLMPFVEHGLLVELVDIADDEAWVERYGLRIPVLRRCD
NGAELNWPFEAEQVAAFLSR*
AnnotationID:5195GeneID:5190
AnnotatorUID: diggins
Modification Date/Time: 2005-04-12 06:06:48
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3033
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:15266




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27524




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5190
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7601
                           PA3033_tr
                           translation of PA3033
                           92
                           97.82
                           97.82
                           0
                           476.0
     

     
     
194592
                           gb|AAG06421.1|AE004728_7
                           (AE004728) hypothetical protein PA3033 [Pseudomonas aeruginosa PAO1]
                           92
                           96.73
                           97.82
                           0
                           473.0
     

     
     
194593
                           gb|AAN67721.1|AE016403_6
                           (AE016781) conserved hypothetical protein [Pseudomonas putida KT2440]
                           92
                           69.56
                           75.00
                           13
                           342.0
     

     
     
194594
                           gb|AAO55848.1|
                           (AE016864) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           98
                           61.22
                           73.46
                           8
                           305.0
     

     






      

          
GC ORFID: 48192How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3033Glimmer Score: 

          
Start: 2781945Stop: 2781667

          
Length: 279


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3033 translation of PA3033Homolog Bit Score 189.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1092 (ORF: BLASTX 126.0), t_PA3033 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCTACCATCGCCGCGAAACACTGCACAGGTCCTTTCGATGCCCCCGGAATGCCAACTCTTCGGAACCCTC 
GGTTGCCACCTCTGCGAAGTCGCGGAGGCGGTGCTGATGCCCTTCGTCGAACATGGCCTGCTGGTCGAACTG 
GTGGACATCGCCGACGACGAAGCCTGGGTCGAGCGCTATGGCCTGCGGATCCCGGTGCTGCGCCGCTGCGAC 
AATGGCGCCGAGCTGAACTGGCCGTTCGAGGCCGAGCAGGTCGCAGCCTTCCTCAGCCGCTGA