ViewGene
Locus Name:
GeneID:
Location:

GeneID:519
TrivialName: PA14_58270
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58270
PAO1 Ortholog Locus:PA4491
Sequence Length:1770
Protein Length:589
Start: 5190964
Stop: 5189195
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07879.1|AE004862_13 (AE004862) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 585/589 (99%), Positives = 586/589 (99%)
Sequence:
ATGAGCGAGAACAACACCCCCAGCCCTGCCAACGGAACCCCTGCGCCCGCCGCTGCGCGCCCCCGAAGCGCC
CTGTGGCCGGTGCTGGGGATCGTCGCCGCGCTGGCCGCCGGCGGTGTGCTGGCCTGGCAGTTGGGCTGGCTG
GAGCGGCTCGGCGGAGGGCGCCCGGCCGAAGAGGACCTCGGCCAGCCGATCGGCGCCCAGGCTCCCGCGGAC
GCCGACGCGCCGCGAGCCTACCGTGACCTGCGCAAGCCCGACGCGCTGATCGAGAGCGTGTCGCTGAGCCGC
CTGCCGAAGGAAATCCTCGAGGTGCCGTTGCTGCGCGATACCCTGACCGAGGACTTCGTTTTCTATTACGAG
AACAATGGCGACCGCCTTGGCCTGACCGGTACGTTGCGGCGGATCATCTACGAGCACGACCTGACCCTGAAG
GACAGCCTGGTCGAGGAACTGCTCGACCAACCGGCCCAGGTCGCCCTCTGGCGCGGCGCCGACGGCCGCCTG
CGCGACTTCGTGGTGGTGCTCAAGCGTGGCGGCCTGGCGCGGGTGCTCGAGCCGCTGGCCCATATCGCCGCC
GACGACCAGCAGTTGCGCAAGGTCGGCGAGCTGGCGGGAACCTCGGTCTATCGCCTGCGCTACGGCAACGAC
AAGGCGATGCTGTTCCTGTCCAAGGGCGACCGGCTGTTGTTGCTGTCGAACCCACGGATGCTCTTCGACGAT
GGTGGCGAAAGCGACGACAGCCCGCTGAACGCTCCGGCCAGCGAAGACCTGGAGGCACTGCTCGACGGCGAC
GAACTGTTCCCCGAGCGCTTCGGCCTGCCGGGCCGCGGCGAGCTGCGCCAGCGCATTACCCTCAATGCCAGC
GTCCTGGCCATGGGCTACCAGCGCTTCATCCCGAGCTTCGCCGGGGTGCGCTTCGAGAAGGGCGAGCAGGGC
TGGAGCAGCTACCTGGCGCTGAACGAGGTGGAACGCCAGCCGCCGCTGGACTTCGCCCCGGTCTGGCAGGCC
ATGCCGATGGGCGCCAGCGCCTGCGTGGCGCTGCCGGTCACCCCTGGCCTGTACGGGGTGATGCTGGAGCGT
CTGGGGGCCGAGCAGAAGATGGCCCAGGCCTTCTCCGAGCATCTCAGCGGCGCTGCCGGTCTCTGCTGGTAC
GCCAGTTCGCGGCTGCATTCGCCGCTGCTGGTGGGCCAGTTGAGCGCGCCGACCAGTGCCGAACTCGACGAC
GAGCTGGGCAAGCTGTTCGGTCGCGTGATCGGCGCGAAGGAAGCCAAGGTCGAGGGTGGCAGCTTCCCGGTG
GAAGACCGGGTGGATGGCCAGACCCGCCGCTGGACCCGCCAGGTCAGCTCGAACTTCGGCGCCTATCCGGCC
AGCCAGGCGGACAACCCGGACAGCATCAGCGGCCGCGCGTTCTTCCGCATCGGCATGGCGCGCCATGGCCAG
ACCCTGCTGTTCTCCCTCGACGACCAGTTGCTCGGCAAGGCCCTGGACACCCTCGACAAACGCTATCCGCCG
CTCGCCGAGGTGTTGCCGAAGGATGCGCTGGTACCGGCCTACCTGGCGCCGCAGCCGCTCTCCGAACTGCTG
CAACGGGAAACCCTCGACAGCCTGCCGCAGGACATGGAGCCGGTCTTCCGCAATGCCGCCGACACCTACTTG
ATGCCGCGCCTGAAAACCCTCGCCGGCAAGGGCAGCTACGCCCTTGGCCTGCCTGCCGGAAGCCAGGCCAAC
GCACCGTGGCAATGGCTGCCGCTGGAATGGCGGTCGCTGTGA
Translation:
MSENNTPSPANGTPAPAAARPRSALWPVLGIVAALAAGGVLAWQLGWLERLGGGRPAEEDLGQPIGAQAPAD
ADAPRAYRDLRKPDALIESVSLSRLPKEILEVPLLRDTLTEDFVFYYENNGDRLGLTGTLRRIIYEHDLTLK
DSLVEELLDQPAQVALWRGADGRLRDFVVVLKRGGLARVLEPLAHIAADDQQLRKVGELAGTSVYRLRYGND
KAMLFLSKGDRLLLLSNPRMLFDDGGESDDSPLNAPASEDLEALLDGDELFPERFGLPGRGELRQRITLNAS
VLAMGYQRFIPSFAGVRFEKGEQGWSSYLALNEVERQPPLDFAPVWQAMPMGASACVALPVTPGLYGVMLER
LGAEQKMAQAFSEHLSGAAGLCWYASSRLHSPLLVGQLSAPTSAELDDELGKLFGRVIGAKEAKVEGGSFPV
EDRVDGQTRRWTRQVSSNFGAYPASQADNPDSISGRAFFRIGMARHGQTLLFSLDDQLLGKALDTLDKRYPP
LAEVLPKDALVPAYLAPQPLSELLQRETLDSLPQDMEPVFRNAADTYLMPRLKTLAGKGSYALGLPAGSQAN
APWQWLPLEWRSL*
AnnotationID:528GeneID:519
AnnotatorUID: diggins
Modification Date/Time: 2005-05-04 05:05:10
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4491
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN81226.1|AE016763_185 (AE016763) Hypothetical protein yfaA [Escherichia coli CFT073]
          Length = 578

 Score =  439 bits (1130), Expect = e-122
 Identities = 236/522 (45%), Positives = 322/522 (61%), Gaps = 26/522 (4%)

>emb|CAD16741.1| (AL646073) PROBABLE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
          Length = 631

 Score =  322 bits (824), Expect = 5e-87
 Identities = 200/539 (37%), Positives = 294/539 (54%), Gaps = 40/539 (7%)









 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:1041




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18183




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31534




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:519_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:519
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
913
                           PA4491_tr
                           translation of PA4491
                           589
                           99.32
                           99.49
                           0
                           3019.0
     

     
     
36912
                           gb|AAG07879.1|AE004862_13
                           (AE004862) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           589
                           99.32
                           99.49
                           0
                           3019.0
     

     
     
36915
                           dbj|BAA16047.1|
                           (D90854) similar to [PIR Accession Number S03759] [Escherichia coli]
                           612
                           41.33
                           56.53
                           73
                           1166.0
     

     
     
36914
                           gb|AAC75290.1|
                           (AE000312) orf, hypothetical protein [Escherichia coli K12]
                           628
                           40.92
                           55.25
                           89
                           1158.0
     

     
     
36916
                           gb|AAN81226.1|AE016763_185
                           (AE016763) Hypothetical protein yfaA [Escherichia coli CFT073]
                           628
                           40.60
                           54.93
                           89
                           1153.0
     

     






      

          
GC ORFID: 43521How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4491Glimmer Score: 

          
Start: 4454643Stop: 4452874

          
Length: 1770


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4491 translation of PA4491Homolog Bit Score 1167.0

          
Other Homologs:  t_PA4491 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGAGAACAACACCCCCAGCCCTGCCAACGGAACCCCTGCGCCCGCCGCTGCGCGCCCCCGAAGCGCC 
CTGTGGCCGGTGCTGGGGATCGTCGCCGCGCTGGCCGCCGGCGGTGTGCTGGCCTGGCAGTTGGGCTGGCTG 
GAGCGGCTCGGCGGAGGGCGCCCGGCCGAAGAGGACCTCGGCCAGCCGATCGGCGCCCAGGCTCCCGCGGAC 
GCCGACGCGCCGCGAGCCTACCGTGACCTGCGCAAGCCCGACGCGCTGATCGAGAGCGTGTCGCTGAGCCGC 
CTGCCGAAGGAAATCCTCGAGGTGCCGTTGCTGCGCGATACCCTGACCGAGGACTTCGTTTTCTATTACGAG 
AACAATGGCGACCGCCTTGGCCTGACCGGTACGTTGCGGCGGATCATCTACGAGCACGACCTGACCCTGAAG 
GACAGCCTGGTCGAGGAACTGCTCGACCAACCGGCCCAGGTCGCCCTCTGGCGCGGCGCCGACGGCCGCCTG 
CGCGACTTCGTGGTGGTGCTCAAGCGTGGCGGCCTGGCGCGGGTGCTCGAGCCGCTGGCCCATATCGCCGCC 
GACGACCAGCAGTTGCGCAAGGTCGGCGAGCTGGCGGGAACCTCGGTCTATCGCCTGCGCTACGGCAACGAC 
AAGGCGATGCTGTTCCTGTCCAAGGGCGACCGGCTGTTGTTGCTGTCGAACCCACGGATGCTCTTCGACGAT 
GGTGGCGAAAGCGACGACAGCCCGCTGAACGCTCCGGCCAGCGAAGACCTGGAGGCACTGCTCGACGGCGAC 
GAACTGTTCCCCGAGCGCTTCGGCCTGCCGGGCCGCGGCGAGCTGCGCCAGCGCATTACCCTCAATGCCAGC 
GTCCTGGCCATGGGCTACCAGCGCTTCATCCCGAGCTTCGCCGGGGTGCGCTTCGAGAAGGGCGAGCAGGGC 
TGGAGCAGCTACCTGGCGCTGAACGAGGTGGAACGCCAGCCGCCGCTGGACTTCGCCCCGGTCTGGCAGGCC 
ATGCCGATGGGCGCCAGCGCCTGCGTGGCGCTGCCGGTCACCCCTGGCCTGTACGGGGTGATGCTGGAGCGT 
CTGGGGGCCGAGCAGAAGATGGCCCAGGCCTTCTCCGAGCATCTCAGCGGCGCTGCCGGTCTCTGCTGGTAC 
GCCAGTTCGCGGCTGCATTCGCCGCTGCTGGTGGGCCAGTTGAGCGCGCCGACCAGTGCCGAACTCGACGAC 
GAGCTGGGCAAGCTGTTCGGTCGCGTGATCGGCGCGAAGGAAGCCAAGGTCGAGGGTGGCAGCTTCCCGGTG 
GAAGACCGGGTGGATGGCCAGACCCGCCGCTGGACCCGCCAGGTCAGCTCGAACTTCGGCGCCTATCCGGCC 
AGCCAGGCGGACAACCCGGACAGCATCAGCGGCCGCGCGTTCTTCCGCATCGGCATGGCGCGCCATGGCCAG 
ACCCTGCTGTTCTCCCTCGACGACCAGTTGCTCGGCAAGGCCCTGGACACCCTCGACAAACGCTATCCGCCG 
CTCGCCGAGGTGTTGCCGAAGGATGCGCTGGTACCGGCCTACCTGGCGCCGCAGCCGCTCTCCGAACTGCTG 
CAACGGGAAACCCTCGACAGCCTGCCGCAGGACATGGAGCCGGTCTTCCGCAATGCCGCCGACACCTACTTG 
ATGCCGCGCCTGAAAACCCTCGCCGGCAAGGGCAGCTACGCCCTTGGCCTGCCTGCCGGAAGCCAGGCCAAC 
GCACCGTGGCAATGGCTGCCGCTGGAATGGCGGTCGCTGTGA