ViewGene
Locus Name:
GeneID:
Location:

GeneID:5189
TrivialName: PA14_44140
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44140
PAO1 Ortholog Locus:PA1574
Sequence Length:282
Protein Length:93
Start: 3928447
Stop: 3928728
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04963.1|AE004586_1 (AE004586) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 93/93 (100%), Positives = 93/93 (100%)
Sequence:
ATGTTCAAGGTCAACGAATACTTCGACGGCACCGTCAAATCCATCGCCTTCGACATGACCGCCGGCCCGGCC
ACCATCGGCGTGATGGCGGCAGGCGAATACGAATTCGGCACCAGCCAGCTGGAGATCATGCATGTGGTCGCC
GGCGCGCTGACGGTCAAGCTGCCGGGCAGCGACGAGTGGCAGGAATACGCCAGCGGCAGCCAGTTCACCGTC
CCGGCGAACAGCAAGTTCCAGCTCAAGGTCGCCCAGGACACCGCCTACCTCTGCGAATACCGCTGA
Translation:
MFKVNEYFDGTVKSIAFDMTAGPATIGVMAAGEYEFGTSQLEIMHVVAGALTVKLPGSDEWQEYASGSQFTV
PANSKFQLKVAQDTAYLCEYR*
AnnotationID:5194GeneID:5189
AnnotatorUID: diggins
Modification Date/Time: 2004-12-16 17:05:22
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:yaiE
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL19345.1| (AE008713) putative cytoplasmic protein [Salmonella typhimurium
          LT2]
          Length = 94

 Score =  100 bits (250), Expect = 1e-21
 Identities = 50/93 (53%), Positives = 66/93 (70%), Gaps = 1/93 (1%)

>gb|AAN78977.1|AE016756_160 (AE016756) Hypothetical protein yaiE [Escherichia coli CFT073]
          Length = 94

 Score = 99.0 bits (245), Expect = 5e-21
 Identities = 48/93 (51%), Positives = 65/93 (69%), Gaps = 1/93 (1%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10378




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27522




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36503




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5189_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5189
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7600
                           PA1574_tr
                           translation of PA1574
                           93
                           99.99
                           99.99
                           0
                           481.0
     

     
     
194583
                           gb|AAG04963.1|AE004586_1
                           (AE004586) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           93
                           99.99
                           99.99
                           0
                           481.0
     

     
     
194584
                           gb|AAO55540.1|
                           (AE016863) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           93
                           76.34
                           86.02
                           0
                           378.0
     

     
     
194585
                           gb|AAN69828.1|AE016622_5
                           (AE016790) conserved hypothetical protein [Pseudomonas putida KT2440]
                           94
                           72.34
                           85.10
                           1
                           364.0
     

     
     
194588
                           emb|CAD08846.1|
                           (AL627266) conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi]
                           94
                           54.25
                           70.21
                           1
                           255.0
     

     






      

          
GC ORFID: 48191How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1574Glimmer Score: 

          
Start: 1025462Stop: 1025181

          
Length: 282


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1574 translation of PA1574Homolog Bit Score 189.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene573 (ORF: BLASTX 148.0), t_PA1574 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTCAAGGTCAACGAATACTTCGACGGCACCGTCAAATCCATCGCCTTCGACATGACCGCCGGCCCGGCC 
ACCATCGGCGTGATGGCGGCAGGCGAATACGAATTCGGCACCAGCCAGCTGGAGATCATGCATGTGGTCGCC 
GGCGCGCTGACGGTCAAGCTGCCGGGCAGCGACGAGTGGCAGGAATACGCCAGCGGCAGCCAGTTCACCGTC 
CCGGCGAACAGCAAGTTCCAGCTCAAGGTCGCCCAGGACACCGCCTACCTCTGCGAATACCGCTGA