ViewGene
Locus Name:
GeneID:
Location:

GeneID:5188
TrivialName: PA14_36940
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36940
PAO1 Ortholog Locus:
Sequence Length:450
Protein Length:149
Start: 3291515
Stop: 3291964
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAC49338.1| (AL603645) hypothetical membrane-anchored protein [Sinorhizobium meliloti]
Identities = 76/145 (52%), Positives = 106/145 (73%)
Sequence:
ATGGATTCCGTACTGCGAGCCGCCGCGCTCTACCTGGTCCTGCTGGTACTCTTCCGCATCGCCGGGCGGCGT
TCACTGACCGACATCACCACCTTCGACCTGCTGCTGCTGATGATCATCGGCGAAGCCACCCAGCAGGCGCTG
CTGGGCGACGACTTCTCGCTGGTCAACGCGGTACTGGTGATCATCACCCTGATCGTCATCGACGTCGGTCTG
TCCCTGCTCAAGCTGCGCCATCCGAAGCTCGACACCCTGATCGAGGGCTCGCCGACGCTCATCGTCGAGTAC
GGCAGGCCATTGCACGCACGCCTGGCCGAGGCCCGCCTGCGCGAGGAAGACATTCTCCTGGCCGCCCGCGAG
ACCCAGGGCCTGGAACGCATGGAGCAGATCCGCTTCGCCATCCTCGAGAAGAACGGCAAGATCTCGATCATT
CCCGATCGCGGCGACTGA
Translation:
MDSVLRAAALYLVLLVLFRIAGRRSLTDITTFDLLLLMIIGEATQQALLGDDFSLVNAVLVIITLIVIDVGL
SLLKLRHPKLDTLIEGSPTLIVEYGRPLHARLAEARLREEDILLAARETQGLERMEQIRFAILEKNGKISII
PDRGD*
AnnotationID:5193GeneID:5188
AnnotatorUID: danlee
Modification Date/Time: 2006-06-01 23:11:12
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|32042239|ref|ZP_00139822.1|  COG2323: Predicted membrane protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|84321124|ref|ZP_00969486.1|  COG2323: Predicted membrane protein [Pseudomonas aeruginosa C3719]
Length=149

 Score =  181 bits (458),  Expect = 1e-44
 Identities = 149/149 (100%), Positives = 149/149 (100%), Gaps = 0/149 (0%)

gi|84327433|ref|ZP_00975452.1|  COG2323: Predicted membrane protein [Pseudomonas aeruginosa 2192]
Length=149

 Score =  181 bits (458),  Expect = 1e-44
 Identities = 148/149 (99%), Positives = 149/149 (100%), Gaps = 0/149 (0%)

gi|94414104|ref|ZP_01293969.1|  hypothetical protein PaerP_01004113 [Pseudomonas aeruginosa PA7]
Length=149

 Score =  172 bits (435),  Expect = 5e-42
 Identities = 142/149 (95%), Positives = 147/149 (98%), Gaps = 0/149 (0%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10376




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27520




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32568




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5188_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5188
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
194582
                           emb|CAC49338.1|
                           (AL603645) hypothetical membrane-anchored protein [Sinorhizobium meliloti]
                           149
                           51.00
                           71.14
                           3
                           379.0
     

     






      

          
GC ORFID: 48190How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: psyr_15may02_Scaffold15_revised_gene2564Glimmer Score: 

          
Start: 1662399Stop: 1661950

          
Length: 450


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: psyr_15may02_Scaffold15_revised_gene2564 related to: gi|16264686|ref|NP_437478.1| (NC_003078) hypothetical membrane-anchored protein [Sinorhizobium meliloti] emb|CAC49338.1| (AL603645) hypothetical membrane-anchored protein [Sinorhizobium meliloti]Homolog Bit Score 190.0

          
Other Homologs:  psyr_15may02_Scaffold15_revised_gene2564 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGATTCCGTACTGCGAGCCGCCGCGCTCTACCTGGTCCTGCTGGTACTCTTCCGCATCGCCGGGCGGCGT 
TCACTGACCGACATCACCACCTTCGACCTGCTGCTGCTGATGATCATCGGCGAAGCCACCCAGCAGGCGCTG 
CTGGGCGACGACTTCTCGCTGGTCAACGCGGTACTGGTGATCATCACCCTGATCGTCATCGACGTCGGTCTG 
TCCCTGCTCAAGCTGCGCCATCCGAAGCTCGACACCCTGATCGAGGGCTCGCCGACGCTCATCGTCGAGTAC 
GGCAGGCCATTGCACGCACGCCTGGCCGAGGCCCGCCTGCGCGAGGAAGACATTCTCCTGGCCGCCCGCGAG 
ACCCAGGGCCTGGAACGCATGGAGCAGATCCGCTTCGCCATCCTCGAGAAGAACGGCAAGATCTCGATCATT 
CCCGATCGCGGCGACTGA