ViewGene
Locus Name:
GeneID:
Location:

GeneID:5187
TrivialName: PA14_03520
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_03520
PAO1 Ortholog Locus:PA0271
Sequence Length:285
Protein Length:94
Start: 320770
Stop: 321054
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03660.1|AE004465_6 (AE004465) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 94/94 (100%), Positives = 94/94 (100%)
Sequence:
ATGAGCGCCAGCCAGGTCATCCGTATTCGCGCGCGCAACGGTCAGTCGGAACGGCTTGGCCTGCGCCTGCAA
CAACTGGTCGAACCGGGGCTGGAGGCGCCGGGTTGCCTGGAGTACCAGGTGCGCAGGGACGCCCTCGAGCCG
GATCTCTGGCTGGTGTGCAGCCAGTGGCGGGAAGCGCAGCAGATGTTCGACTACCTGGCCGGCGGCATCCAG
CAGGTATTCGCCGAAGTGCTCTGGCGCTCCCTGGCGGCGAGCCTCGAAGTGCAGGATGACGCAGGCTAG
Translation:
MSASQVIRIRARNGQSERLGLRLQQLVEPGLEAPGCLEYQVRRDALEPDLWLVCSQWREAQQMFDYLAGGIQ
QVFAEVLWRSLAASLEVQDDAG*
AnnotationID:5192GeneID:5187
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 05:05:40
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0271
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10374




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27518




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33616




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5187_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5187
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7598
                           PA0271_tr
                           translation of PA0271
                           94
                           99.99
                           99.99
                           0
                           482.0
     

     
     
194580
                           gb|AAG03660.1|AE004465_6
                           (AE004465) hypothetical protein PA0271 [Pseudomonas aeruginosa PAO1]
                           94
                           99.99
                           99.99
                           0
                           482.0
     

     
     
7599
                           PA2048_tr
                           translation of PA2048
                           135
                           36.29
                           50.37
                           41
                           248.0
     

     
     
194581
                           gb|AAG05436.1|AE004631_5
                           (AE004631) hypothetical protein PA2048 [Pseudomonas aeruginosa PAO1]
                           135
                           36.29
                           50.37
                           41
                           248.0
     

     






      

          
GC ORFID: 48189How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0271Glimmer Score: 

          
Start: 6122111Stop: 6122395

          
Length: 285


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0271 translation of PA0271Homolog Bit Score 190.0

          
Other Homologs:  t_PA0271 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGCCAGCCAGGTCATCCGTATTCGCGCGCGCAACGGTCAGTCGGAACGGCTTGGCCTGCGCCTGCAA 
CAACTGGTCGAACCGGGGCTGGAGGCGCCGGGTTGCCTGGAGTACCAGGTGCGCAGGGACGCCCTCGAGCCG 
GATCTCTGGCTGGTGTGCAGCCAGTGGCGGGAAGCGCAGCAGATGTTCGACTACCTGGCCGGCGGCATCCAG 
CAGGTATTCGCCGAAGTGCTCTGGCGCTCCCTGGCGGCGAGCCTCGAAGTGCAGGATGACGCAGGCTAG