ViewGene
Locus Name:
GeneID:
Location:

GeneID:5186
TrivialName: PA14_38060
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38060
PAO1 Ortholog Locus:PA2045
Sequence Length:261
Protein Length:86
Start: 3395401
Stop: 3395661
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05433.1|AE004631_2 (AE004631) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 85/86 (98%), Positives = 86/86 (100%)
Sequence:
ATGAAGTTCCTGCTGATCGGGCTGATCCGCTTCTACCAGTACGCAATCAGCCCGCTGATCGGTCCCCGCTGC
CGCTTCTACCCCAGTTGCTCGCACTACACCCTGGAAGCCATCCGCGTACATGGCGCGCTGCGAGGCGGCTAC
CTCGGCGCGCGCCGGCTGCTGCGCTGCCACCCCTGGCACCCGGGCGGCTACGACCCGGTTCCGGAGCGCCAG
GAACAGGCGTGCGCCTGCCACAGAACGGCGAAGCCCGGCGAATGA
Translation:
MKFLLIGLIRFYQYAISPLIGPRCRFYPSCSHYTLEAIRVHGALRGGYLGARRLLRCHPWHPGGYDPVPERQ
EQACACHRTAKPGE*
AnnotationID:5191GeneID:5186
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 05:05:14
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2045
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAP11693.1| (AE017013) hypothetical Cytosolic Protein [Bacillus cereus ATCC
          14579]
          Length = 78

 Score =  108 bits (269), Expect = 8e-24
 Identities = 44/73 (60%), Positives = 60/73 (82%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10372




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27516




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32659




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5186_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5186
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7597
                           PA2045_tr
                           translation of PA2045
                           86
                           98.83
                           99.99
                           0
                           482.0
     

     
     
194563
                           gb|AAG05433.1|AE004631_2
                           (AE004631) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           86
                           98.83
                           99.99
                           0
                           482.0
     

     
     
194576
                           gb|AAO59026.1|
                           (AE016876) conserved hypothetical protein TIGR00278 [Pseudomonas syringae pv. tomato str. DC3000]
                           86
                           56.97
                           67.44
                           5
                           252.0
     

     
     
194565
                           gb|AAL94216.1|
                           (AE010516) hypothetical cytosolic protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
                           86
                           54.65
                           69.76
                           4
                           261.0
     

     
     
194573
                           emb|CAE39683.1|
                           (BX640436) conserved hypothetical protein [Bordetella parapertussis]
                           91
                           53.84
                           65.93
                           6
                           254.0
     

     






      

          
GC ORFID: 48188How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2045Glimmer Score: 

          
Start: 1558509Stop: 1558249

          
Length: 261


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2045 translation of PA2045Homolog Bit Score 190.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene4117 (ORF: BLASTX 103.0), t_PA2045 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGTTCCTGCTGATCGGGCTGATCCGCTTCTACCAGTACGCAATCAGCCCGCTGATCGGTCCCCGCTGC 
CGCTTCTACCCCAGTTGCTCGCACTACACCCTGGAAGCCATCCGCGTACATGGCGCGCTGCGAGGCGGCTAC 
CTCGGCGCGCGCCGGCTGCTGCGCTGCCACCCCTGGCACCCGGGCGGCTACGACCCGGTTCCGGAGCGCCAG 
GAACAGGCGTGCGCCTGCCACAGAACGGCGAAGCCCGGCGAATGA