ViewGene

Locus Name:
GeneID:
Location:

GeneID: 5185

TrivialName: PA14_42480

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_42480

PAO1 Ortholog Locus: PA1705

Sequence Length: 297

Protein Length: 98

Start: 3782821

Stop: 3782525

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG05094.1|AE004597_8 (AE004597) regulator in type III secretion [Pseudomonas aeruginosa PAO1] Identities = 97/98 (98%), Positives = 97/98 (98%)

Sequence:

ATGGGCGACATGAACGAATACACCGAAGACACCCTGCGGGCGACCGTCCAGGCCGCCGAACTGGCGATTCGC
GACAGCGAGGAACGCGGCCGCCTGCTGGCGGAAATGTGGCAAGGCCTGGGGCTTGCCGCGGACGCCGGCGAG
CTGCTGTTCCTGGCGCCGGAGCGAGAGCTGGCGCGAGCCGCCGAAGAGGAGCTGCTGGCCGAACTGCGGCGC
ATGCGCAGTTCCCAGCCGACGCAGGGCGAGCAGGGTACCCGGCCGCGGCGTCCGACGCCGATGCGTGGCTTG
TTGATCTGA

Translation:

MGDMNEYTEDTLRATVQAAELAIRDSEERGRLLAEMWQGLGLAADAGELLFLAPERELARAAEEELLAELRR
MRSSQPTQGEQGTRPRRPTPMRGLLI*

AnnotationID:5190 GeneID:5185

AnnotatorUID: diggins

Modification Date/Time: 2005-02-28 06:06:27

Gene Name: pcrG

Confidence Code: 1

GeneProduct: regulator in type III secretion

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (19) Protein secretion/export apparatus

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:10370

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:27514

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:36579

Author/Investigator(s): Allmond LR, Karaca TJ, Nguyen VN, Nguyen T, Wiener-Kronish JP, Sawa T.

Title: Protein binding between PcrG-PcrV and PcrH-PopB/PopD encoded by the pcrGVH-popBD operon of the Pseudomonas aeruginosa type III secretion system.

PubMed: 12654846

MedLine:

Source:

Infect Immun. 2003 Apr;71(4):2230-3.

Reference Type: Journal

Data:

URL:	`http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=12654846`

ReferenceID:37852

Author/Investigator(s): Nanao M, Ricard-Blum S, Di Guilmi AM, Lemaire D, Lascoux D, Chabert J, Attree I, Dessen A.

Title: Type III secretion proteins PcrV and PcrG from Pseudomonas aeruginosa form a 1:1 complex through high affinity interactions.

PubMed: 14565848

MedLine:

Source:

BMC Microbiol. 2003 Oct 18;3(1):21.

Reference Type: Journal

Data:

URL:	`http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=14565848`

Homologs By Global Alignment

Gene ID:5185

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

7596 PA1705_tr translation of PA1705 98 98.97 98.97 0 482.0

194560 gb|AAG05094.1|AE004597_8 (AE004597) regulator in type III secretion [Pseudomonas aeruginosa PAO1] 98 98.97 98.97 0 482.0

194561 gb|AAO91770.1| (AY232997) PcrG [Pseudomonas aeruginosa] 98 97.95 97.95 0 478.0

194562 gb|AAC45934.1| (AF010149) PcrG [Pseudomonas aeruginosa] 98 97.95 97.95 0 478.0

GC ORFID: `48187`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA1705`	Glimmer Score:
Start: `1171088`	Stop: `1171384`
Length: `297`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA1705 translation of PA1705`	Homolog Bit Score `190.0`
Other Homologs: `t_PA1705 (ORF: GLIMMER)`
GC ORF Sequence
`ATGGGCGACATGAACGAATACACCGAAGACACCCTGCGGGCGACCGTCCAGGCCGCCGAACTGGCGATTCGC GACAGCGAGGAACGCGGCCGCCTGCTGGCGGAAATGTGGCAAGGCCTGGGGCTTGCCGCGGACGCCGGCGAG CTGCTGTTCCTGGCGCCGGAGCGAGAGCTGGCGCGAGCCGCCGAAGAGGAGCTGCTGGCCGAACTGCGGCGC ATGCGCAGTTCCCAGCCGACGCAGGGCGAGCAGGGTACCCGGCCGCGGCGTCCGACGCCGATGCGTGGCTTG TTGATCTGA`