ViewGene

Locus Name:
GeneID:
Location:

GeneID:5182
TrivialName: PA14_57440
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57440
PAO1 Ortholog Locus:PA4419
Sequence Length:294
Protein Length:97
Start: 5118191
Stop: 5117898
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07807.1|AE004856_18 (AE004856) cell division protein FtsL [Pseudomonas aeruginosa PAO1]
Identities = 97/97 (100%), Positives = 97/97 (100%)
Sequence:
ATGAGCCGTCTCTTCGTCAAGCGCCTGCCTACCGGCAGCTTCCTCATGTTGCTGCTTTATATAGGTCTGTTG
CTCTCGGCGATTGCCGTGGCCTACAGCACCTACTGGAACCGGCAACTGCTCAACTCGCTGTATTCCGAGCTG
AGCGTGCGCGACAAGGCGCAGGCCGAGTGGGGCCGGTTGATTCTCGAGCAGAGCACCTGGACCGCTCATAGC
CGCATCGAAAGCCTGGCGGTGGAACAGTTGCGCATGCGCGTTCCCGACCCGGCCGAGGTCAGGATGGTGGCG
CCATGA
Translation:
MSRLFVKRLPTGSFLMLLLYIGLLLSAIAVAYSTYWNRQLLNSLYSELSVRDKAQAEWGRLILEQSTWTAHS
RIESLAVEQLRMRVPDPAEVRMVAP*
AnnotationID:5187GeneID:5182
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 18:06:52
Gene Name:ftsL
Confidence Code:2
GeneProduct:Cell division protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(6) Cell division
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam04999,COG3116
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO57864.1| (AE016871) cell division protein FtsL, putative [Pseudomonas
          syringae pv. tomato str. DC3000]
          Length = 97

 Score =  160 bits (405), Expect = 1e-39
 Identities = 78/97 (80%), Positives = 89/97 (91%)


>gb|AAN66953.1|AE016324_3 (AE016779) cell division protein FtsL [Pseudomonas putida KT2440]
          Length = 97

 Score =  150 bits (378), Expect = 2e-36
 Identities = 75/97 (77%), Positives = 85/97 (87%)

Structural Features:
pfam04999, FtsL, Cell division protein FtsL.
CD-Length = 97 residues, 100.0% aligned
Score =  120 bits (303), Expect = 4e-29 
Identities = 42/97 (43%), Positives = 59/97 (60%)

COG3116, FtsL, Cell division protein 
[Cell division and chromosome partitioning]
CD-Length = 105 residues,  92.4% aligned
Score =  118 bits (298), Expect = 2e-28
Identities = 44/97 (45%), Positives = 60/97 (61%)
Genomic Context:
Comment:
ReferenceID:10364
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27508
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31461
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:5182_cdd.html
URL:
ReferenceID:32806
Author/Investigator(s): Buddelmeijer N, Beckwith J.
Title: A complex of the Escherichia coli cell division proteins FtsL, FtsB and FtsQ forms independently of its localization to the septal region.
PubMed: 15165235
MedLine:
Source:
Mol Microbiol. 2004 Jun;52(5):1315-27.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15165235
ReferenceID:32807
Author/Investigator(s): Guzman LM, Weiss DS, Beckwith J.
Title: Domain-swapping analysis of FtsI, FtsL, and FtsQ, bitopic membrane proteins essential for cell division in Escherichia coli.
PubMed: 9260951
MedLine:
Source:
J Bacteriol. 1997 Aug;179(16):5094-103.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=9260951
ReferenceID:32808
Author/Investigator(s): Donachie WD.
Title: The cell cycle of Escherichia coli.
PubMed: 8257098
MedLine:
Source:
Annu Rev Microbiol. 1993;47:199-230.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8257098
ReferenceID:32809
Author/Investigator(s): Guzman LM, Barondess JJ, Beckwith J.
Title: FtsL, an essential cytoplasmic membrane protein involved in cell division in Escherichia coli.
PubMed: 1332942
MedLine:
Source:
J Bacteriol. 1992 Dec;174(23):7716-28.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1332942
Homologs By Global Alignment
Gene ID:5182

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7594 PA4419_tr translation of PA4419 97 99.99 99.99 0 484.0
194524 gb|AAG07807.1|AE004856_18 (AE004856) cell division protein FtsL [Pseudomonas aeruginosa PAO1] 97 99.99 99.99 0 484.0
194525 gb|AAO57864.1| (AE016871) cell division protein FtsL, putative [Pseudomonas syringae pv. tomato str. DC3000] 97 80.41 91.75 0 405.0
194526 gb|AAN66953.1|AE016324_3 (AE016779) cell division protein FtsL [Pseudomonas putida KT2440] 97 77.31 87.62 0 378.0
GC ORFID: 48184How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4419Glimmer Score:
Start: 4381870Stop: 4381577
Length: 294
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4419 translation of PA4419Homolog Bit Score 191.0
Other Homologs: psyr_15may02_Scaffold12_revised_gene2039 (ORF: BLASTX 159.0), t_PA4419 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCCGTCTCTTCGTCAAGCGCCTGCCTACCGGCAGCTTCCTCATGTTGCTGCTTTATATAGGTCTGTTG
CTCTCGGCGATTGCCGTGGCCTACAGCACCTACTGGAACCGGCAACTGCTCAACTCGCTGTATTCCGAGCTG
AGCGTGCGCGACAAGGCGCAGGCCGAGTGGGGCCGGTTGATTCTCGAGCAGAGCACCTGGACCGCTCATAGC
CGCATCGAAAGCCTGGCGGTGGAACAGTTGCGCATGCGCGTTCCCGACCCGGCCGAGGTCAGGATGGTGGCG
CCATGA