ViewGene
Locus Name:
GeneID:
Location:

GeneID:5181
TrivialName: PA14_21850
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21850
PAO1 Ortholog Locus:PA3260
Sequence Length:312
Protein Length:103
Start: 1899157
Stop: 1899468
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06648.1|AE004748_6 (AE004748) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 101/103 (98%), Positives = 101/103 (98%)
Sequence:
ATGAATGTCCAAGTGATCACGCGAGACGGCGAGGCGGAATACGCGGTGTTGCCCTGGGCCGAATACCAGGCG
TTGCTGGCCGCCGCCGGTCGCCCGGCCGCCAGTGTCGCGGTGGAGACGACCGCGCCGGCGGTGCCATTCGCG
AGCCTGCTGGAGCGCCGCGAGGCGCGCGGCCTGAGCCTGGAACAGGTGGCCCGGGAGGTCGGTATCAGTCCT
TCCTACATGGCGATGATCGAACGCGGCGAACGCGAGGCCAGCGAGGCCATCCTGTTCGCCCTGGAGCGTGTG
CTGGGCAAAGCGACGGGGGCCTGA
Translation:
MNVQVITRDGEAEYAVLPWAEYQALLAAAGRPAASVAVETTAPAVPFASLLERREARGLSLEQVAREVGISP
SYMAMIERGEREASEAILFALERVLGKATGA*
AnnotationID:5186GeneID:5181
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 17:05:10
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA3260
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd00093,smart00530
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67337.1|AE016360_3 (AE016780) transcriptional regulator, Cro/CI family [Pseudomonas
           putida KT2440]
          Length = 112

 Score = 99.8 bits (247), Expect = 3e-21
 Identities = 54/106 (50%), Positives = 76/106 (71%), Gaps = 6/106 (5%)








 
Structural Features:
cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins.
CD-Length = 58 residues,  84.5% aligned
Score = 48.2 bits (115), Expect = 1e-07
Identities = 19/49 (38%), Positives = 31/49 (63%)

smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins 
CD-Length = 56 residues,  89.3% aligned
Score = 50.9 bits (122), Expect = 2e-08
Identities = 20/50 (40%), Positives = 32/50 (64%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10362




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27506




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32284




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5181_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5181
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7593
                           PA3260_tr
                           translation of PA3260
                           103
                           98.05
                           98.05
                           0
                           484.0
     

     
     
194523
                           gb|AAG06648.1|AE004748_6
                           (AE004748) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           103
                           98.05
                           98.05
                           0
                           484.0
     

     






      

          
GC ORFID: 48183How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3260Glimmer Score: 

          
Start: 3054774Stop: 3054463

          
Length: 312


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3260 translation of PA3260Homolog Bit Score 191.0

          
Other Homologs:  t_PA3260 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATGTCCAAGTGATCACGCGAGACGGCGAGGCGGAATACGCGGTGTTGCCCTGGGCCGAATACCAGGCG 
TTGCTGGCCGCCGCCGGTCGCCCGGCCGCCAGTGTCGCGGTGGAGACGACCGCGCCGGCGGTGCCATTCGCG 
AGCCTGCTGGAGCGCCGCGAGGCGCGCGGCCTGAGCCTGGAACAGGTGGCCCGGGAGGTCGGTATCAGTCCT 
TCCTACATGGCGATGATCGAACGCGGCGAACGCGAGGCCAGCGAGGCCATCCTGTTCGCCCTGGAGCGTGTG 
CTGGGCAAAGCGACGGGGGCCTGA