ViewGene
Locus Name:
GeneID:
Location:

GeneID:5180
TrivialName: PA14_06390
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06390
PAO1 Ortholog Locus:PA0490
Sequence Length:294
Protein Length:97
Start: 563601
Stop: 563308
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03879.1|AE004486_8 (AE004486) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 96/97 (98%), Positives = 96/97 (98%)
Sequence:
ATGGGTACAGAAGGCTTTTTCGACGGACTGGGCGAGATGCTGGGCAGGGCGATCCGCTTCGTGGTGGACCTG
CTCTCCGGCCTGCTGGGCGGCATCTGGGGCGCCATGGACGACTTCCTCCACGGCCTGGCCAGGGCCATCGGC
ATGGACGCATCGCTGTTCAGCTTCGTCTTCCTGGTGCTCGGCCTGTTGCTGCTCTACAGCGGCATACGCGCC
TTCATGCGCCGCTCGATAGTCGGCGGGGTGATCTGGACGGTGCTCGGCCTGATCGTCATGAGCTGGCTCATC
CACTGA
Translation:
MGTEGFFDGLGEMLGRAIRFVVDLLSGLLGGIWGAMDDFLHGLARAIGMDASLFSFVFLVLGLLLLYSGIRA
FMRRSIVGGVIWTVLGLIVMSWLIH*
AnnotationID:5185GeneID:5180
AnnotatorUID: diggins
Modification Date/Time: 2005-03-27 17:05:31
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0490
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE32919.1| (BX640444) putative membrane protein [Bordetella bronchiseptica]
          Length = 98

 Score = 95.9 bits (237), Expect = 4e-20
 Identities = 47/93 (50%), Positives = 64/93 (68%)

>emb|CAE36661.1| (BX640427) putative membrane protein [Bordetella parapertussis]
          Length = 98

 Score = 95.9 bits (237), Expect = 4e-20
 Identities = 47/93 (50%), Positives = 64/93 (68%)








 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10360




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27504




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5180
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7592
                           PA0490_tr
                           translation of PA0490
                           97
                           98.96
                           98.96
                           0
                           487.0
     

     
     
194520
                           gb|AAG03879.1|AE004486_8
                           (AE004486) hypothetical protein PA0490 [Pseudomonas aeruginosa PAO1]
                           97
                           98.96
                           98.96
                           0
                           487.0
     

     
     
194522
                           gb|AAO58275.1|
                           (AE016873) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           97
                           53.60
                           71.13
                           0
                           269.0
     

     
     
194521
                           gb|AAN66198.1|AE016248_1
                           (AE016776) conserved hypothetical protein [Pseudomonas putida KT2440]
                           111
                           51.35
                           64.86
                           14
                           289.0
     

     






      

          
GC ORFID: 48182How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0490Glimmer Score: 

          
Start: 6364943Stop: 6364650

          
Length: 294


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0490 translation of PA0490Homolog Bit Score 192.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5313 (ORF: BLASTX 107.0), t_PA0490 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGGTACAGAAGGCTTTTTCGACGGACTGGGCGAGATGCTGGGCAGGGCGATCCGCTTCGTGGTGGACCTG 
CTCTCCGGCCTGCTGGGCGGCATCTGGGGCGCCATGGACGACTTCCTCCACGGCCTGGCCAGGGCCATCGGC 
ATGGACGCATCGCTGTTCAGCTTCGTCTTCCTGGTGCTCGGCCTGTTGCTGCTCTACAGCGGCATACGCGCC 
TTCATGCGCCGCTCGATAGTCGGCGGGGTGATCTGGACGGTGCTCGGCCTGATCGTCATGAGCTGGCTCATC 
CACTGA