ViewGene

Locus Name:
GeneID:
Location:

GeneID:518
TrivialName: PA14_46450
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46450
PAO1 Ortholog Locus:PA1376
Sequence Length:1734
Protein Length:577
Start: 4131283
Stop: 4133016
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04765.1|AE004567_4 (AE004567) isocitrate dehydrogenase kinase/phosphatase [Pseudomonas aeruginosa PAO1]
Identities = 574/577 (99%), Positives = 574/577 (99%)
Sequence:
ATGGTCCAGAGCGCCCCAGCCAGCGAAATCGCCGCCCTCATCCTGCGCGGTTTCGACGATTACCGAGAGCAG
TTCCGCGAGATCACCGACGGCGCCCGTGCCCGCTTCGAGCAGGCGCAGTGGCAGGAAGCGCAGCGCGCCTCT
ACGCAGCGGATCAACCTCTACGAGGAAAAGGTCGCCGAGACGGTGGCCGGGCTGCGCGTGGGGCTGGCCGAC
AGCGAGCTGCTGGACGTGGAGCGCTGGCCGATCATCAAGAGCGCCTACATCGCGCAGATCGACCTGCGGCTG
GACGACGAGCTGGCCGAGACCTGGTTCAACTCGATCTTCTGCGGGTTGTTCAGCCACGACAACATCAGCGAC
GGCACGATGTTCGTGCACACCACCCGGCCCTCGCTGCGCGCCCACGCCCGCGCGCCCTACACCCGCACCTAC
CGGCCGGGCGGCGACCTGCGCCAGGCGCTGGAGAAGATCTTCGACGACTACCGCTTCGACGTGCCCTACGAC
GACCGCGAGCGCGACCTCGAACGGATCGACGCACTGCTGCACAGCAACCTGCCGGACTGGGTGTGCAAGGAC
CCGGACCTGGCCATCGAGCTGATCGGCTCGGTGTTCTATCGCAACAAGGGCGCCTACCTGGTGGGTCGCCTG
TTCACCCCGGACGAGCAGTGGCCGCTGGTGTTCCCGCTGCTGCACCGCGAGGGCCACGGCATCCAGTTCGAC
ACGGTGATCACCGACGAGGCGGAAGTCTCGATCATCTTCTCCTTCACCCGCTCCTACTTCATGGTCGACGTG
CCGGTGCCGGCCGAGCTGGTGGCCTTCCTCAAGCGCCTGCTGCCGGGCAAGCACCTGGCCGAGCTGTACACC
TCGATCGGCTTCTACAAGCAGGGCAAGAGCGAGTTCTACCGCGCCCTGATCAACCACCTGGCGACCACCGAC
GACCGCTTCGTCATGGCCCCCGGCGTGCGCGGCATGGTGATGAGCGTGTTCACCCTGCCCGGCTTCAACACG
GTGTTCAAGATCATCAAGGACCGCTTCAACCCTTCGAAGAGCGTCGACCACGCCACGGTGATCCAGAAGTAC
CAGTTGGTGAAGAACCACGACCGGGTCGGACGCCTGGCCGACACCCAGCAGTTCGCCGACTTCCGCTTCCCG
GTGAGCAAGTTCGAGCCGGAGTGCCTGGCAGAACTGCTGGAAGTGGCGCCGTCGACGGTGGTGATGGAAGGC
GACGTGGTGCTGATCCGCCACTGCTGGACGGAGCGGCGCATGACCCCGCTGAACATCTACCTGGAGAACGCC
AGCGAGGCGCAGACCCGCGAGGCGCTGAACGACTACGGGCTGGCGATCAAGCAACTGGCGGCAGCGAACATC
TTCCCCGGCGACATGCTGCTGAAGAACTTCGGCGTGACTCGCCATGGCCGGGTGGTGTTCTACGACTACGAC
GAGATCTGCTACCTCACCGAGGTGAACTTCCGCTACATCCCCGAGCCGCGCTTCCCCGAGGACGAGATGTCG
TCCGAGCCCTGGTATTCGGTGGGGCCCAACGACGTGTTCCCGGAAGAATTCCCGCGCTTCCTGTTCGTCGAC
CTCAACCAGCGCCGGCTATTCGCCAAGCTGCACGGCAACCTCTACGACGCCAAATACTGGCAGGGCCTGCAG
GAGCAGATCCGCGAGGGCAAGGTGATCGACGTGTTTCCCTATCGGCGGCAGGAGACGCCTGAACAGTTGCTC
GGGTAG
Translation:
MVQSAPASEIAALILRGFDDYREQFREITDGARARFEQAQWQEAQRASTQRINLYEEKVAETVAGLRVGLAD
SELLDVERWPIIKSAYIAQIDLRLDDELAETWFNSIFCGLFSHDNISDGTMFVHTTRPSLRAHARAPYTRTY
RPGGDLRQALEKIFDDYRFDVPYDDRERDLERIDALLHSNLPDWVCKDPDLAIELIGSVFYRNKGAYLVGRL
FTPDEQWPLVFPLLHREGHGIQFDTVITDEAEVSIIFSFTRSYFMVDVPVPAELVAFLKRLLPGKHLAELYT
SIGFYKQGKSEFYRALINHLATTDDRFVMAPGVRGMVMSVFTLPGFNTVFKIIKDRFNPSKSVDHATVIQKY
QLVKNHDRVGRLADTQQFADFRFPVSKFEPECLAELLEVAPSTVVMEGDVVLIRHCWTERRMTPLNIYLENA
SEAQTREALNDYGLAIKQLAAANIFPGDMLLKNFGVTRHGRVVFYDYDEICYLTEVNFRYIPEPRFPEDEMS
SEPWYSVGPNDVFPEEFPRFLFVDLNQRRLFAKLHGNLYDAKYWQGLQEQIREGKVIDVFPYRRQETPEQLL
G*
AnnotationID:527GeneID:518
AnnotatorUID: diggins
Modification Date/Time: 2005-04-27 09:09:40
Gene Name:aceK
Confidence Code:2
GeneProduct:isocitrate dehydrogenase kinase/phosphatase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam06315
Secondary Functional Category(ies):
EC Number:2.7.1.116
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70138.1|AE016653_9 (AE016791) isocitrate dehydrogenase kinase/phosphatase [Pseudomonas
           putida KT2440]
          Length = 571

 Score =  898 bits (2321), Expect = 0.0
 Identities = 436/569 (76%), Positives = 483/569 (84%)

>gb|AAM83613.1|AE013603_1 (AE013603) isocitrate dehydrogenase kinase/phosphatase [Yersinia
           pestis KIM]
          Length = 575

 Score =  537 bits (1383), Expect = e-152
 Identities = 272/562 (48%), Positives = 370/562 (65%), Gaps = 4/562 (0%)

>gb|AAC43879.1| (U43350) isocitrate dehydrogenase kinase/phosphatase [Salmonella
           enterica]
          Length = 583

 Score =  510 bits (1313), Expect = e-143
 Identities = 269/563 (47%), Positives = 362/563 (64%), Gaps = 6/563 (1%)
Structural Features:
pfam06315, AceK, Isocitrate dehydrogenase kinase/phosphatase (AceK).
CD-Length = 564 residues, 100.0% aligned
Score =  893 bits (2309), Expect = 0.0
Identities = 344/565 (60%), Positives = 410/565 (72%), Gaps = 2/565 (0%)
Genomic Context:
Comment:
ReferenceID:1039
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18181
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37396
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:518_cdd.html
URL:
ReferenceID:38000
Author/Investigator(s): Cortay JC, Bleicher F, Rieul C, Reeves HC, Cozzone AJ.
Title: Nucleotide sequence and expression of the aceK gene coding for isocitrate dehydrogenase kinase/phosphatase in Escherichia coli.
PubMed: 2826408
MedLine:
Source:
J Bacteriol. 1988 Jan;170(1):89-97.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2826408
ReferenceID:38001
Author/Investigator(s): LaPorte DC, Chung T.
Title: A single gene codes for the kinase and phosphatase which regulate isocitrate dehydrogenase.
PubMed: 2999109
MedLine:
Source:
J Biol Chem. 1985 Dec 5;260(28):15291-7.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2999109
ReferenceID:38002
Author/Investigator(s): Chung T, Klumpp DJ, LaPorte DC.
Title: Glyoxylate bypass operon of Escherichia coli: cloning and determination of the functional map.
PubMed: 2826399
MedLine:
Source:
J Bacteriol. 1988 Jan;170(1):386-92.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2826399
Homologs By Global Alignment
Gene ID:518

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
912 PA1376_tr translation of PA1376 577 99.48 99.48 0 3019.0
36877 gb|AAG04765.1|AE004567_4 (AE004567) isocitrate dehydrogenase kinase/phosphatase [Pseudomonas aeruginosa PAO1] 577 99.48 99.48 0 3019.0
36878 gb|AAN70138.1|AE016653_9 (AE016791) isocitrate dehydrogenase kinase/phosphatase [Pseudomonas putida KT2440] 577 75.56 83.70 6 2319.0
36879 gb|AAM83613.1|AE013603_1 (AE013603) isocitrate dehydrogenase kinase/phosphatase [Yersinia pestis KIM] 582 47.76 64.60 12 1381.0
36880 emb|CAC93192.1| (AJ414158) isocitrate dehydrogenase kinase/phosphatase [Yersinia pestis CO92] 582 47.76 64.60 12 1381.0
GC ORFID: 43520How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1376Glimmer Score:
Start: 822626Stop: 820893
Length: 1734
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA1376 translation of PA1376Homolog Bit Score 1167.0
Other Homologs: t_PA1376 (ORF: GLIMMER)
GC ORF Sequence
ATGGTCCAGAGCGCCCCAGCCAGCGAAATCGCCGCCCTCATCCTGCGCGGTTTCGACGATTACCGAGAGCAG
TTCCGCGAGATCACCGACGGCGCCCGTGCCCGCTTCGAGCAGGCGCAGTGGCAGGAAGCGCAGCGCGCCTCT
ACGCAGCGGATCAACCTCTACGAGGAAAAGGTCGCCGAGACGGTGGCCGGGCTGCGCGTGGGGCTGGCCGAC
AGCGAGCTGCTGGACGTGGAGCGCTGGCCGATCATCAAGAGCGCCTACATCGCGCAGATCGACCTGCGGCTG
GACGACGAGCTGGCCGAGACCTGGTTCAACTCGATCTTCTGCGGGTTGTTCAGCCACGACAACATCAGCGAC
GGCACGATGTTCGTGCACACCACCCGGCCCTCGCTGCGCGCCCACGCCCGCGCGCCCTACACCCGCACCTAC
CGGCCGGGCGGCGACCTGCGCCAGGCGCTGGAGAAGATCTTCGACGACTACCGCTTCGACGTGCCCTACGAC
GACCGCGAGCGCGACCTCGAACGGATCGACGCACTGCTGCACAGCAACCTGCCGGACTGGGTGTGCAAGGAC
CCGGACCTGGCCATCGAGCTGATCGGCTCGGTGTTCTATCGCAACAAGGGCGCCTACCTGGTGGGTCGCCTG
TTCACCCCGGACGAGCAGTGGCCGCTGGTGTTCCCGCTGCTGCACCGCGAGGGCCACGGCATCCAGTTCGAC
ACGGTGATCACCGACGAGGCGGAAGTCTCGATCATCTTCTCCTTCACCCGCTCCTACTTCATGGTCGACGTG
CCGGTGCCGGCCGAGCTGGTGGCCTTCCTCAAGCGCCTGCTGCCGGGCAAGCACCTGGCCGAGCTGTACACC
TCGATCGGCTTCTACAAGCAGGGCAAGAGCGAGTTCTACCGCGCCCTGATCAACCACCTGGCGACCACCGAC
GACCGCTTCGTCATGGCCCCCGGCGTGCGCGGCATGGTGATGAGCGTGTTCACCCTGCCCGGCTTCAACACG
GTGTTCAAGATCATCAAGGACCGCTTCAACCCTTCGAAGAGCGTCGACCACGCCACGGTGATCCAGAAGTAC
CAGTTGGTGAAGAACCACGACCGGGTCGGACGCCTGGCCGACACCCAGCAGTTCGCCGACTTCCGCTTCCCG
GTGAGCAAGTTCGAGCCGGAGTGCCTGGCAGAACTGCTGGAAGTGGCGCCGTCGACGGTGGTGATGGAAGGC
GACGTGGTGCTGATCCGCCACTGCTGGACGGAGCGGCGCATGACCCCGCTGAACATCTACCTGGAGAACGCC
AGCGAGGCGCAGACCCGCGAGGCGCTGAACGACTACGGGCTGGCGATCAAGCAACTGGCGGCAGCGAACATC
TTCCCCGGCGACATGCTGCTGAAGAACTTCGGCGTGACTCGCCATGGCCGGGTGGTGTTCTACGACTACGAC
GAGATCTGCTACCTCACCGAGGTGAACTTCCGCTACATCCCCGAGCCGCGCTTCCCCGAGGACGAGATGTCG
TCCGAGCCCTGGTATTCGGTGGGGCCCAACGACGTGTTCCCGGAAGAATTCCCGCGCTTCCTGTTCGTCGAC
CTCAACCAGCGCCGGCTATTCGCCAAGCTGCACGGCAACCTCTACGACGCCAAATACTGGCAGGGCCTGCAG
GAGCAGATCCGCGAGGGCAAGGTGATCGACGTGTTTCCCTATCGGCGGCAGGAGACGCCTGAACAGTTGCTC
GGGTAG