ViewGene
Locus Name:
GeneID:
Location:

GeneID:5178
TrivialName: PA14_34940
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34940
PAO1 Ortholog Locus:PA2292
Sequence Length:282
Protein Length:93
Start: 3109722
Stop: 3110003
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05680.1|AE004655_2 (AE004655) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 91/93 (97%), Positives = 92/93 (98%)
Sequence:
ATGACCCAGCCGCCGCTGCGCCTGCGCAATGCCGCCAGGGACGGCTGGCTGATGCTCGAATGGGCGGACGGT
GCGGTCAGCCGGATCGACCATGCCCGCTTGCGCGCCGCCTGTCCCTGTGCGCAATGCCGGGCGCAGCGCCTG
CGCGGACGGATCGACGCGGCGGAGCAGGGCGTGCGCCTGCGCGATATCCGCCTGCAGGGCTACGGCGTGCAG
TTGCTGTTCGACGATGGTCACGAGCGCGGTATCTACCCCTGGTCCTATCTGCGCGACGAACTCTGA
Translation:
MTQPPLRLRNAARDGWLMLEWADGAVSRIDHARLRAACPCAQCRAQRLRGRIDAAEQGVRLRDIRLQGYGVQ
LLFDDGHERGIYPWSYLRDEL*
AnnotationID:5183GeneID:5178
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 12:12:32
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2292
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10356




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27500




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32495




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5178_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5178
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7590
                           PA2292_tr
                           translation of PA2292
                           93
                           97.84
                           98.92
                           0
                           489.0
     

     
     
194514
                           gb|AAG05680.1|AE004655_2
                           (AE004655) hypothetical protein PA2292 [Pseudomonas aeruginosa PAO1]
                           93
                           97.84
                           98.92
                           0
                           489.0
     

     
     
194515
                           gb|AAN65844.1|AE016212_10
                           (AE016774) conserved hypothetical protein [Pseudomonas putida KT2440]
                           95
                           53.68
                           63.15
                           4
                           267.0
     

     






      

          
GC ORFID: 48180How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2292Glimmer Score: 

          
Start: 1844194Stop: 1843913

          
Length: 282


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2292 translation of PA2292Homolog Bit Score 192.0

          
Other Homologs:  

          
GC ORF Sequence

           
ATGACCCAGCCGCCGCTGCGCCTGCGCAATGCCGCCAGGGACGGCTGGCTGATGCTCGAATGGGCGGACGGT 
GCGGTCAGCCGGATCGACCATGCCCGCTTGCGCGCCGCCTGTCCCTGTGCGCAATGCCGGGCGCAGCGCCTG 
CGCGGACGGATCGACGCGGCGGAGCAGGGCGTGCGCCTGCGCGATATCCGCCTGCAGGGCTACGGCGTGCAG 
TTGCTGTTCGACGATGGTCACGAGCGCGGTATCTACCCCTGGTCCTATCTGCGCGACGAACTCTGA