ViewGene
Locus Name:
GeneID:
Location:

GeneID:5177
TrivialName: PA14_63040
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63040
PAO1 Ortholog Locus:PA4766
Sequence Length:306
Protein Length:101
Start: 5625009
Stop: 5624704
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08152.1|AE004890_5 (AE004890) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 100/101 (99%), Positives = 100/101 (99%)
Sequence:
ATGGCTGAGATCGCCGTCGAGGTGGTCTACGCGCTGCCGGAGCGACAGGCGTTACTGCGCCTGAGCGTGCCG
GCAGGTACCAGCGCACGCGAGGCCGTGCTGCTCTCCGGCATCGCCGAGGCGTTTCCAGGGCTGGATGTGCAA
GGTTGTCCGCTGGGTATCTTCGGCAAGCTCCTGGCTCGCCCGGAGGAGCGGGTGCTGGAGACCGGCGAACGG
GTGGAGATCTACCGCCCGTTGATCGCCGATCCCAAGGAGGTACGCAAGCAGCGTGCCGCACGGGCCCGGAGC
GAGCGCGAAGGCGGTTAG
Translation:
MAEIAVEVVYALPERQALLRLSVPAGTSAREAVLLSGIAEAFPGLDVQGCPLGIFGKLLARPEERVLETGER
VEIYRPLIADPKEVRKQRAARARSEREGG*
AnnotationID:5182GeneID:5177
AnnotatorUID: diggins
Modification Date/Time: 2005-02-08 14:02:29
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:yfjF
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN81590.1|AE016764_272 (AE016764) Protein yfjF [Escherichia coli CFT073]
          Length = 102

 Score = 79.7 bits (195), Expect = 3e-15
 Identities = 41/95 (43%), Positives = 64/95 (67%), Gaps = 2/95 (2%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10354




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27498




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37675




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5177_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5177
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7589
                           PA4766_tr
                           translation of PA4766
                           101
                           99.00
                           99.00
                           0
                           491.0
     

     
     
194510
                           gb|AAG08152.1|AE004890_5
                           (AE004890) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           101
                           99.00
                           99.00
                           0
                           491.0
     

     
     
194511
                           gb|AAC05677.1|
                           (AF050676) unknown [Pseudomonas aeruginosa]
                           101
                           99.00
                           99.00
                           0
                           491.0
     

     
     
194512
                           gb|AAN03805.1|AF490983_5
                           (AF490983) 10 kDa hypothetical protein [Azotobacter vinelandii]
                           117
                           57.26
                           64.95
                           16
                           327.0
     

     
     
194513
                           gb|AAO57960.1|
                           (AE016872) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           105
                           56.19
                           73.33
                           5
                           290.0
     

     






      

          
GC ORFID: 48179How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4766Glimmer Score: 

          
Start: 4888689Stop: 4888384

          
Length: 306


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4766 translation of PA4766Homolog Bit Score 193.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5472 (ORF: BLASTX 111.0), t_PA4766 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCTGAGATCGCCGTCGAGGTGGTCTACGCGCTGCCGGAGCGACAGGCGTTACTGCGCCTGAGCGTGCCG 
GCAGGTACCAGCGCACGCGAGGCCGTGCTGCTCTCCGGCATCGCCGAGGCGTTTCCAGGGCTGGATGTGCAA 
GGTTGTCCGCTGGGTATCTTCGGCAAGCTCCTGGCTCGCCCGGAGGAGCGGGTGCTGGAGACCGGCGAACGG 
GTGGAGATCTACCGCCCGTTGATCGCCGATCCCAAGGAGGTACGCAAGCAGCGTGCCGCACGGGCCCGGAGC 
GAGCGCGAAGGCGGTTAG