ViewGene
Locus Name:
GeneID:
Location:

GeneID:5176
TrivialName: PA14_29890
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29890
PAO1 Ortholog Locus:PA2646
Sequence Length:309
Protein Length:102
Start: 2589357
Stop: 2589049
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06034.1|AE004693_5 (AE004693) NADH dehydrogenase I chain K [Pseudomonas aeruginosa PAO1]
Identities = 102/102 (100%), Positives = 102/102 (100%)
Sequence:
ATGAACGCAATACCACTGGAACACGGCCTGGCCCTCGCCAGCGTCCTGTTCGCCCTCGGACTGGTCGGCTTG
ATGGTGCGACGCAACATCCTGTTCGTACTGATGAGCCTGGAAGTGATGATGAACGCCGCCGCCCTCGCCTTC
GTGGTCGCCGGCAGCCGCTGGGGCCAACCCGACGGCCAGGTGATGTTCATCCTGGTGCTGAGCCTCGCGGCC
GCCGAAGCGAGCATCGGCCTGGCGATCCTGCTGCAACTGTATCGCCGCTTCCACACCCTCGATATCGACGCT
GCCAGCGAGATGCGCGGATGA
Translation:
MNAIPLEHGLALASVLFALGLVGLMVRRNILFVLMSLEVMMNAAALAFVVAGSRWGQPDGQVMFILVLSLAA
AEASIGLAILLQLYRRFHTLDIDAASEMRG*
AnnotationID:5181GeneID:5176
AnnotatorUID: diggins
Modification Date/Time: 2005-04-29 11:11:15
Gene Name:nuoK
Confidence Code:2
GeneProduct:NADH dehydrogenase I chain K
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0713
Secondary Functional Category(ies):
EC Number:1.6.5.3
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56852.1| (AE016868) NADH dehydrogenase I, K subunit [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 102

 Score =  185 bits (469), Expect = 5e-47
 Identities = 95/102 (93%), Positives = 99/102 (97%)

>gb|AAL89573.1| (AF281148) NADH dehydrogenase I subunit K [Pseudomonas fluorescens]
          Length = 102

 Score =  179 bits (455), Expect = 2e-45

>emb|CAC91348.1| (AJ414152) NADH dehydrogenase i chain k [Yersinia pestis CO92]
          Length = 100

 Score =  155 bits (393), Expect = 3e-38
 Identities = 77/99 (77%), Positives = 90/99 (90%)








 
Structural Features:
COG0713, NuoK, NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) 
[Energy production and conversion]
CD-Length = 100 residues, 100.0% aligned
Score =  104 bits (261), Expect = 2e-24
Identities = 55/100 (55%), Positives = 75/100 (75%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10352




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27496




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33203




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5176_cdd.html


    		




 
URL:

















    ReferenceID:34581




  
Author/Investigator(s):
        Camacho Carvajal MM, Wijfjes AH, Mulders IH, Lugtenberg BJ, Bloemberg GV.





  
Title:
        Characterization of NADH dehydrogenases of Pseudomonas fluorescens WCS365 and their role in competitive root colonization.




  
PubMed:
        12118882


MedLine:
        




    
Source:
Mol Plant Microbe Interact. 2002 Jul;15(7):662-71.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12118882

















    ReferenceID:34591




  
Author/Investigator(s):
        Dupuis A, Peinnequin A, Chevallet M, Lunardi J, Darrouzet E, Pierrard B, Procaccio V, Issartel JP.





  
Title:
        Identification of five Rhodobacter capsulatus genes encoding the equivalent of ND subunits of the mitochondrial NADH-ubiquinone oxidoreductase.




  
PubMed:
        8566820


MedLine:
        




    
Source:
Gene. 1995 Dec 29;167(1-2):99-104.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8566820









           
Homologs By Global Alignment 

           

       



     
Gene ID:5176
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7588
                           PA2646_tr
                           translation of PA2646
                           102
                           99.99
                           99.99
                           0
                           491.0
     

     
     
194487
                           gb|AAG06034.1|AE004693_5
                           (AE004693) NADH dehydrogenase I chain K [Pseudomonas aeruginosa PAO1]
                           102
                           99.99
                           99.99
                           0
                           491.0
     

     
     
194488
                           gb|AAO56852.1|
                           (AE016868) NADH dehydrogenase I, K subunit [Pseudomonas syringae pv. tomato str. DC3000]
                           102
                           93.13
                           97.05
                           0
                           469.0
     

     
     
194489
                           gb|AAN69711.1|AE016607_5
                           (AE016789) NADH dehydrogenase I, K subunit [Pseudomonas putida KT2440]
                           102
                           91.17
                           96.07
                           0
                           456.0
     

     
     
194490
                           gb|AAL89573.1|
                           (AF281148) NADH dehydrogenase I subunit K [Pseudomonas fluorescens]
                           102
                           89.21
                           96.07
                           0
                           455.0
     

     






      

          
GC ORFID: 48178How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2646Glimmer Score: 

          
Start: 2364569Stop: 2364877

          
Length: 309


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2646 translation of PA2646Homolog Bit Score 193.0

          
Other Homologs:  psyr_15may02_Scaffold17_revised_gene2774 (ORF: BLASTX 187.0), t_PA2646 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGCAATACCACTGGAACACGGCCTGGCCCTCGCCAGCGTCCTGTTCGCCCTCGGACTGGTCGGCTTG 
ATGGTGCGACGCAACATCCTGTTCGTACTGATGAGCCTGGAAGTGATGATGAACGCCGCCGCCCTCGCCTTC 
GTGGTCGCCGGCAGCCGCTGGGGCCAACCCGACGGCCAGGTGATGTTCATCCTGGTGCTGAGCCTCGCGGCC 
GCCGAAGCGAGCATCGGCCTGGCGATCCTGCTGCAACTGTATCGCCGCTTCCACACCCTCGATATCGACGCT 
GCCAGCGAGATGCGCGGATGA