ViewGene
Locus Name:
GeneID:
Location:

GeneID:5175
TrivialName: PA14_50240
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50240
PAO1 Ortholog Locus:PA1096
Sequence Length:297
Protein Length:98
Start: 4462922
Stop: 4462626
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04485.1|AE004540_5 (AE004540) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 98/98 (100%), Positives = 98/98 (100%)
Sequence:
ATGAGCCAAGCCACGCAACAACTGGATGAAACCCGACTCGCCCTGGCCGATGCGTTGCAGGCCGGCAACTGG
GATGCCATCGGTGAGCTGGATCAGGTCTGTCAGGTCAAGATCGACCAGGCCATGCATGATGACGAGCGCGAC
GAGCAGGCCCTGCGCGTGAGCCTGGAGCAGTTGCTCAGCTTGTACAACGATATGCTCAGCGCTTGCCGGCAG
CAGCGCGAAGCAATCGGTGCGGAGCTGACCGGTCTGCAGCGTGCGAGTAAAGGCGCCAAGGTCTACCAGATG
TTCGGATAA
Translation:
MSQATQQLDETRLALADALQAGNWDAIGELDQVCQVKIDQAMHDDERDEQALRVSLEQLLSLYNDMLSACRQ
QREAIGAELTGLQRASKGAKVYQMFG*
AnnotationID:5180GeneID:5175
AnnotatorUID: danlee
Modification Date/Time: 2004-05-26 22:10:44
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA1096
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10350




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27494




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5175
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7587
                           PA1096_tr
                           translation of PA1096
                           98
                           99.99
                           99.99
                           0
                           491.0
     

     
     
194486
                           gb|AAG04485.1|AE004540_5
                           (AE004540) hypothetical protein PA1096 [Pseudomonas aeruginosa PAO1]
                           98
                           99.99
                           99.99
                           0
                           491.0
     

     






      

          
GC ORFID: 48177How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1096Glimmer Score: 

          
Start: 490986Stop: 491282

          
Length: 297


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA1096 translation of PA1096Homolog Bit Score 193.0

          
Other Homologs:  t_PA1096 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCAAGCCACGCAACAACTGGATGAAACCCGACTCGCCCTGGCCGATGCGTTGCAGGCCGGCAACTGG 
GATGCCATCGGTGAGCTGGATCAGGTCTGTCAGGTCAAGATCGACCAGGCCATGCATGATGACGAGCGCGAC 
GAGCAGGCCCTGCGCGTGAGCCTGGAGCAGTTGCTCAGCTTGTACAACGATATGCTCAGCGCTTGCCGGCAG 
CAGCGCGAAGCAATCGGTGCGGAGCTGACCGGTCTGCAGCGTGCGAGTAAAGGCGCCAAGGTCTACCAGATG 
TTCGGATAA