ViewGene
Locus Name:
GeneID:
Location:

GeneID:5174
TrivialName: PA14_00800
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00800
PAO1 Ortholog Locus:PA0068
Sequence Length:276
Protein Length:91
Start: 78396
Stop: 78671
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03458.1|AE004446_6 (AE004446) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 91/91 (100%), Positives = 91/91 (100%)
Sequence:
ATGAGCCCGGCGATCACCAGGAAGCGCTTCATCGCCGGGGCGGTCTGCCCGGCGTGCAGCGAACAGGACAAG
ATCCAGATGTGGGAAGAGGACGGCGTGCCGCACCGCGAATGCGTGGCCTGCGGCTACGCCGACACGCTCAAC
GCCCAGGGCCAGTCGATCCCGAAGGAGCTGGGTACGCGGGTCAACCAGAACGCGCCGAAGCCGGCCAACCCG
AAGGTGCAGTCGGTGCAGTTCTTCCCCAATCCCAAGCTGAAGAAGAAGCCCGACGCCTGA
Translation:
MSPAITRKRFIAGAVCPACSEQDKIQMWEEDGVPHRECVACGYADTLNAQGQSIPKELGTRVNQNAPKPANP
KVQSVQFFPNPKLKKKPDA*
AnnotationID:5179GeneID:5174
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 17:05:21
Gene Name:
Confidence Code:3
GeneProduct:putative nucleic-acid-binding protein
Cell Localization:()
Synonyms:PA0068
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(18) Nucleotide biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3529
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3529, COG3529, Predicted nucleic-acid-binding protein containing 
a Zn-ribbon domain
CD-Length = 66 residues,  92.4% aligned
Score = 84.7 bits (209), Expect = 2e-18
Identities = 32/75 (42%), Positives = 39/75 (52%), Gaps = 14/75 (18%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10348




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27492




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33407




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5174_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5174
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7586
                           PA0068_tr
                           translation of PA0068
                           91
                           99.99
                           99.99
                           0
                           492.0
     

     
     
194483
                           gb|AAG03458.1|AE004446_6
                           (AE004446) hypothetical protein PA0068 [Pseudomonas aeruginosa PAO1]
                           91
                           99.99
                           99.99
                           0
                           492.0
     

     
     
194484
                           gb|AAO53697.1|
                           (AE016856) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           95
                           72.63
                           80.00
                           4
                           364.0
     

     
     
194485
                           gb|AAN65731.1|AE016199_3
                           (AE016774) conserved hypothetical protein [Pseudomonas putida KT2440]
                           94
                           72.34
                           78.72
                           4
                           359.0
     

     






      

          
GC ORFID: 48176How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0068Glimmer Score: 

          
Start: 5879733Stop: 5880008

          
Length: 276


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0068 translation of PA0068Homolog Bit Score 194.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene2997 (ORF: BLASTX 146.0), t_PA0068 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCCGGCGATCACCAGGAAGCGCTTCATCGCCGGGGCGGTCTGCCCGGCGTGCAGCGAACAGGACAAG 
ATCCAGATGTGGGAAGAGGACGGCGTGCCGCACCGCGAATGCGTGGCCTGCGGCTACGCCGACACGCTCAAC 
GCCCAGGGCCAGTCGATCCCGAAGGAGCTGGGTACGCGGGTCAACCAGAACGCGCCGAAGCCGGCCAACCCG 
AAGGTGCAGTCGGTGCAGTTCTTCCCCAATCCCAAGCTGAAGAAGAAGCCCGACGCCTGA