ViewGene
Locus Name:
GeneID:
Location:

GeneID:5173
TrivialName: PA14_68000
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68000
PAO1 Ortholog Locus:PA5148
Sequence Length:273
Protein Length:90
Start: 6069232
Stop: 6069504
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08533.1|AE004927_11 (AE004927) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 90/90 (100%), Positives = 90/90 (100%)
Sequence:
ATGAGCCGCACCGTGATGTGCCGCAAGTACCACGAAGAGCTGCCCGGCCTCGACCGTCCGCCGTATCCTGGC
GCGAAGGGCGAGGACATCTACAACAACGTGTCGCGCAAGGCCTGGGACGAGTGGCAGAAGCACCAGACCATG
CTGATCAACGAGCGTCGCCTGAACATGATGAACGCCGAGGACCGCAAGTTCCTCCAGCAGGAGATGGACAAG
TTCCTCTCCGGCGAGGACTACGCCAAGGCCGACGGCTACGTGCCGCCATCCGCCTGA
Translation:
MSRTVMCRKYHEELPGLDRPPYPGAKGEDIYNNVSRKAWDEWQKHQTMLINERRLNMMNAEDRKFLQQEMDK
FLSGEDYAKADGYVPPSA*
AnnotationID:5178GeneID:5173
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 13:01:07
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5148
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10346




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27490




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34916




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5173_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5173
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7585
                           PA5148_tr
                           translation of PA5148
                           90
                           99.99
                           99.99
                           0
                           492.0
     

     
     
194477
                           gb|AAG08533.1|AE004927_11
                           (AE004927) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           90
                           99.99
                           99.99
                           0
                           492.0
     

     
     
194478
                           gb|AAO58769.1|
                           (AE016875) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           90
                           82.22
                           93.33
                           0
                           414.0
     

     
     
194479
                           gb|AAN65916.1|AE016219_9
                           (AE016775) conserved hypothetical protein [Pseudomonas putida KT2440]
                           90
                           77.77
                           93.33
                           0
                           407.0
     

     
     
194480
                           emb|CAE33897.1|
                           (BX640447) conserved hypothetical protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           90
                           52.22
                           70.00
                           0
                           255.0
     

     






      

          
GC ORFID: 48175How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5148Glimmer Score: 

          
Start: 5332918Stop: 5333190

          
Length: 273


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5148 translation of PA5148Homolog Bit Score 194.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6944 (ORF: BLASTX 164.0), t_PA5148 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCGCACCGTGATGTGCCGCAAGTACCACGAAGAGCTGCCCGGCCTCGACCGTCCGCCGTATCCTGGC 
GCGAAGGGCGAGGACATCTACAACAACGTGTCGCGCAAGGCCTGGGACGAGTGGCAGAAGCACCAGACCATG 
CTGATCAACGAGCGTCGCCTGAACATGATGAACGCCGAGGACCGCAAGTTCCTCCAGCAGGAGATGGACAAG 
TTCCTCTCCGGCGAGGACTACGCCAAGGCCGACGGCTACGTGCCGCCATCCGCCTGA