ViewGene
Locus Name:
GeneID:
Location:

GeneID:5170
TrivialName: PA14_36470
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36470
PAO1 Ortholog Locus:PA2174
Sequence Length:309
Protein Length:102
Start: 3247252
Stop: 3247560
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05562.1|AE004644_9 (AE004644) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 96/102 (94%), Positives = 97/102 (95%)
Sequence:
GTGGATTTTTTTCTTGCGTTGCGCAAACCGGGGAGAGCTGGCCAGATGAACCTTTCCTACCTGTACCTGAAG
AAGATCCTCGAGGAGGAACTGCGCGACCACGACTGCCAGTGCCAACTGAACCCCGACTTCACGGTGACCATC
AGTTGCCGCGTGGGTGGTCCCCACGGCGCGCTCTACATCGTGCCCAACAGTGACTTCCTGAAGAGCAGCAGC
TTCAGCGACCTCAGCGCCTTCATCCTCAACCTGCGCGAGGAAATCAGGCGCTTCGGCGAGTTCGAGGCGGAA
CTCCAGACCGGCACCGGCTGA
Translation:
MDFFLALRKPGRAGQMNLSYLYLKKILEEELRDHDCQCQLNPDFTVTISCRVGGPHGALYIVPNSDFLKSSS
FSDLSAFILNLREEIRRFGEFEAELQTGTG*
AnnotationID:5175GeneID:5170
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 12:12:10
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2174
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:15262




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27484




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5170
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7582
                           PA2174_tr
                           translation of PA2174
                           102
                           94.11
                           95.09
                           0
                           493.0
     

     
     
194290
                           gb|AAG05562.1|AE004644_9
                           (AE004644) hypothetical protein PA2174 [Pseudomonas aeruginosa PAO1]
                           102
                           93.13
                           95.09
                           0
                           490.0
     

     






      

          
GC ORFID: 48172How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2174Glimmer Score: 

          
Start: 1706663Stop: 1706355

          
Length: 309


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2174 translation of PA2174Homolog Bit Score 194.0

          
Other Homologs:  t_PA2174 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGATTTTTTTCTTGCGTTGCGCAAACCGGGGAGAGCTGGCCAGATGAACCTTTCCTACCTGTACCTGAAG 
AAGATCCTCGAGGAGGAACTGCGCGACCACGACTGCCAGTGCCAACTGAACCCCGACTTCACGGTGACCATC 
AGTTGCCGCGTGGGTGGTCCCCACGGCGCGCTCTACATCGTGCCCAACAGTGACTTCCTGAAGAGCAGCAGC 
TTCAGCGACCTCAGCGCCTTCATCCTCAACCTGCGCGAGGAAATCAGGCGCTTCGGCGAGTTCGAGGCGGAA 
CTCCAGACCGGCACCGGCTGA