ViewGene
Locus Name:
GeneID:
Location:

GeneID:5169
TrivialName: PA14_27170
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27170
PAO1 Ortholog Locus:PA2855
Sequence Length:279
Protein Length:92
Start: 2360766
Stop: 2361044
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06243.1|AE004712_3 (AE004712) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 92/92 (100%), Positives = 92/92 (100%)
Sequence:
ATGCCGCGTCCCGCCTGGACCCTCTACGCCTATCAACTGATCGAGCCCGACGATCAGCTGGACCTGTTCGCC
TGTCGCGAGGTCCGGGTGCATGTGGTGGCGCGTCAGCTGGAGCTGGATACCCCGGCGGACCGCACGCTTTGC
GGCAAGCTGCTGCCGGCCCAGCCGCGCTGGCAGCCGCTGGAACGGGCGCGTCTGCGCGACCGGCTGCTGTGT
CCCGATTGCCGGAAACAACTGGAGGCGGAAAAGCGCGGGGAGCGCCTGTCCTGGTTGGTCTGA
Translation:
MPRPAWTLYAYQLIEPDDQLDLFACREVRVHVVARQLELDTPADRTLCGKLLPAQPRWQPLERARLRDRLLC
PDCRKQLEAEKRGERLSWLV*
AnnotationID:5174GeneID:5169
AnnotatorUID: diggins
Modification Date/Time: 2005-04-07 05:05:24
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2855
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10338




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27482




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5169
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7581
                           PA2855_tr
                           translation of PA2855
                           92
                           99.99
                           99.99
                           0
                           496.0
     

     
     
194287
                           gb|AAG06243.1|AE004712_3
                           (AE004712) hypothetical protein PA2855 [Pseudomonas aeruginosa PAO1]
                           92
                           99.99
                           99.99
                           0
                           496.0
     

     
     
194288
                           gb|AAN67932.1|AE016425_9
                           (AE016782) conserved hypothetical protein [Pseudomonas putida KT2440]
                           106
                           58.49
                           66.98
                           14
                           326.0
     

     
     
194289
                           gb|AAO55783.1|
                           (AE016863) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           93
                           58.06
                           75.26
                           1
                           298.0
     

     






      

          
GC ORFID: 48171How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2855Glimmer Score: 

          
Start: 2593160Stop: 2592882

          
Length: 279


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2855 translation of PA2855Homolog Bit Score 195.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1052 (ORF: BLASTX 124.0), t_PA2855 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGCGTCCCGCCTGGACCCTCTACGCCTATCAACTGATCGAGCCCGACGATCAGCTGGACCTGTTCGCC 
TGTCGCGAGGTCCGGGTGCATGTGGTGGCGCGTCAGCTGGAGCTGGATACCCCGGCGGACCGCACGCTTTGC 
GGCAAGCTGCTGCCGGCCCAGCCGCGCTGGCAGCCGCTGGAACGGGCGCGTCTGCGCGACCGGCTGCTGTGT 
CCCGATTGCCGGAAACAACTGGAGGCGGAAAAGCGCGGGGAGCGCCTGTCCTGGTTGGTCTGA