ViewGene
Locus Name:
GeneID:
Location:

GeneID:5168
TrivialName: PA14_54110
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54110
PAO1 Ortholog Locus:PA0786
Sequence Length:306
Protein Length:101
Start: 4799303
Stop: 4798998
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04175.1|AE004513_7 (AE004513) probable transporter [Pseudomonas aeruginosa PAO1]
Identities = 99/101 (98%), Positives = 101/101 (100%)
Sequence:
ATGGCCTGGTTCCATCTGCTGGTGGCGGCGGCCTTCGAGGTCGCCTTCGCCATGGGCATGAAGTTCTCCAAC
GGCTTCGGCAAGCTCTGGCCATCGCTGCTGACGGTGGTCGCGGCGATCGGCGGGATCTATTTCCTGACCCTG
GCGCTGCGCGAGTTGCCGGTCAGCGTCGCCTATCCGATCTGGACCGCGATCGGTTCGCTGGGCACGGTGTTC
CTCGGCGTCCTGCTGCTTGGCGAGAGCCTGACGGCGGTGAAGCTGATTTCTGTCGGGTTGATCGTCGCCGGG
GTGGCCGGGCTCAAGTAA
Translation:
MAWFHLLVAAAFEVAFAMGMKFSNGFGKLWPSLLTVVAAIGGIYFLTLALRELPVSVAYPIWTAIGSLGTVF
LGVLLLGESLTAVKLISVGLIVAGVAGLK*
AnnotationID:5173GeneID:5168
AnnotatorUID: danlee
Modification Date/Time: 2004-04-15 18:06:51
Gene Name:
Confidence Code:3
GeneProduct:probable transporter
Cell Localization:()
Synonyms:PA0786
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):Membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
OG2076, EmrE, Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
      CD-Length = 106 residues,  95.3% aligned
      Score = 82.4 bits (204), Expect = 2e-17






   
Genomic Context:






   
Comment:


















    ReferenceID:10336




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27480




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5168
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7578
                           PA0786_tr
                           translation of PA0786
                           101
                           98.01
                           99.99
                           0
                           496.0
     

     
     
194264
                           gb|AAG04175.1|AE004513_7
                           (AE004513) probable transporter [Pseudomonas aeruginosa PAO1]
                           101
                           98.01
                           99.99
                           0
                           496.0
     

     
     
194266
                           gb|AAM35376.1|
                           (AE011675) SugE protein [Xanthomonas axonopodis pv. citri str. 306]
                           104
                           50.00
                           68.26
                           3
                           282.0
     

     
     
194265
                           gb|AAR34037.1|
                           (AE017209) sugE protein [Geobacter sulfurreducens PCA]
                           106
                           48.11
                           67.92
                           5
                           282.0
     

     
     
194267
                           gb|AAM39792.1|
                           (AE012145) SugE protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           104
                           48.07
                           68.26
                           3
                           276.0
     

     






      

          
GC ORFID: 48170How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0786Glimmer Score: 

          
Start: 154604Stop: 154909

          
Length: 306


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA0786 translation of PA0786Homolog Bit Score 195.0

          
Other Homologs:  t_PA3265 (ORF: BLASTX 100.0), t_PA0786 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCTGGTTCCATCTGCTGGTGGCGGCGGCCTTCGAGGTCGCCTTCGCCATGGGCATGAAGTTCTCCAAC 
GGCTTCGGCAAGCTCTGGCCATCGCTGCTGACGGTGGTCGCGGCGATCGGCGGGATCTATTTCCTGACCCTG 
GCGCTGCGCGAGTTGCCGGTCAGCGTCGCCTATCCGATCTGGACCGCGATCGGTTCGCTGGGCACGGTGTTC 
CTCGGCGTCCTGCTGCTTGGCGAGAGCCTGACGGCGGTGAAGCTGATTTCTGTCGGGTTGATCGTCGCCGGG 
GTGGCCGGGCTCAAGTAA