ViewGene
Locus Name:
GeneID:
Location:

GeneID:5167
TrivialName: PA14_13200
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_13200
PAO1 Ortholog Locus:
Sequence Length:777
Protein Length:258
Start: 1137043
Stop: 1137819
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAO55767.1| (AE016863) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
Identities = 108/243 (44%), Positives = 148/243 (60%)
Sequence:
ATGGCTTTCGCCGCATCCGTGATTCGCACCGTTTCCGGCCTCGAAGTCGAGGTCATGCATGCCTATGCCAGG
ATCGTCGAGGGCACCGACCCGGAAGCGCTGCACGATCTGCGCGTCGCCGCCAGGCGCCTGCGCAGCCTGTTG
AAACCGTTGCGCCTGGGGGCTCTGGCCGAGGACCTGGATCGCGCGGCGAAAGCCCTCGGGCAGGCCACCAAT
CCGATCCGCGACATGGAAGTGATGGCGGCCGAGCTGGAGCGCCATGGCCTGCTGATTCCGGCTTCGCTGCGC
AGGCAGGCGGTGCTCCGCTGGTATCGGCAGGCAGGGAGCAGTCCACAGATCAAGGATTTGCTGGACGCACTG
GACGCCTGGCCGGACGGTGTCCGGCGGGCGATGACGGAAGGTCGCCTCGACGATCTCGAGGCGGAGGCGAGC
AAGCGAATCAGGCACCAGTTGCGCAAGCTGCTGGCGGCGCTCGACGATCCCGGACACGATCTTCACGACATC
CGCCTGTTGGTAAAGCGCGCACGTTATTCGCAGGAGGCCTACCCGGACCTCTGCCCTCTGCCGGGAAAGGTG
CTCGACACGCTGAAAACGCTACAGACCATGCTGGGGGATTGGCACGACCACCAGCAATGGTGCCTCAGGGCC
GAAGAGCAGGCCGACCTGCGCCCCCTGAGCGCGGAATGGCGCAGGTCCGAGGCCGCCGCCCTGGACCGGGCC
GAGGAATCCGTTCGGCGCCTTGCCAGGTTGCTGGGGAAAGCCATCGGCCGCACCTGA
Translation:
MAFAASVIRTVSGLEVEVMHAYARIVEGTDPEALHDLRVAARRLRSLLKPLRLGALAEDLDRAAKALGQATN
PIRDMEVMAAELERHGLLIPASLRRQAVLRWYRQAGSSPQIKDLLDALDAWPDGVRRAMTEGRLDDLEAEAS
KRIRHQLRKLLAALDDPGHDLHDIRLLVKRARYSQEAYPDLCPLPGKVLDTLKTLQTMLGDWHDHQQWCLRA
EEQADLRPLSAEWRRSEAAALDRAEESVRRLARLLGKAIGRT*
AnnotationID:5172GeneID:5167
AnnotatorUID: danlee
Modification Date/Time: 2005-10-19 13:01:52
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|71735720|ref|YP_274248.1|  CHAD domain superfamily [Pseudomonas syringae pv. phaseolicola 1448A]
     Score =  200 bits (509),  Expect = 3e-50
     Identities = 108/243 (44%), Positives = 147/243 (60%), Gaps = 0/243 (0%)

gi|28869453|ref|NP_792072.1|  hypothetical protein PSPTO2251 [Pseudomonas syringae pv. tomato str. DC3000]
     Length=253
     Score =  197 bits (500),  Expect = 4e-49
     Identities = 108/243 (44%), Positives = 148/243 (60%), Gaps = 0/243 (0%)

gi|66045296|ref|YP_235137.1|  CHAD [Pseudomonas syringae pv. syringae B728a]
     Length=253
     Score =  196 bits (497),  Expect = 8e-49
     Identities = 105/243 (43%), Positives = 145/243 (59%), Gaps = 0/243 (0%)






 
Structural Features:
 COG5607, Uncharacterized conserved protein [Function unknown].
             CD-Length = 283 residues,  97.9% aligned
             Score = 49.6 bits (118), Expect = 3e-07

pfam05235, CHAD, CHAD domain. The CHAD domain is an alpha-helical domain functionally associated 
with the pfam01928 domains. It has conserved histidines that may chelate metals.
             CD-Length = 276 residues, only  51.8% aligned
             Score = 37.0 bits (85), Expect = 0.002






   
Genomic Context:






   
Comment:


















    ReferenceID:10334




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17063




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5167_CDD.html


    		




 
URL:

















    ReferenceID:27478




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5167
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
194261
                           gb|AAO55767.1|
                           (AE016863) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           259
                           41.69
                           57.52
                           7
                           492.0
     

     
     
194262
                           gb|AAN67920.1|AE016424_6
                           (AE016782) conserved hypothetical protein [Pseudomonas putida KT2440]
                           266
                           41.35
                           52.63
                           15
                           464.0
     

     
     
7577
                           PA2872_tr
                           translation of PA2872
                           260
                           38.46
                           53.07
                           6
                           437.0
     

     
     
194263
                           gb|AAG06260.1|AE004713_9
                           (AE004713) hypothetical protein PA2872 [Pseudomonas aeruginosa PAO1]
                           260
                           38.46
                           53.07
                           6
                           437.0
     

     






      

          
GC ORFID: 48169How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: psyr_15may02_Scaffold1_revised_gene1043Glimmer Score: 

          
Start: 3816895Stop: 3816119

          
Length: 777


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: psyr_15may02_Scaffold1_revised_gene1043 related to: gi|15598068|ref|NP_251562.1| (NC_002516) hypothetical protein [Pseudomonas aeruginosa] pir||E83287 hypothetical protein PA2872 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG06260.1|AE004713_9 (Homolog Bit Score 196.0

          
Other Homologs:  t_PA2872 (ORF: BLASTX 174.0), psyr_15may02_Scaffold1_revised_gene1043 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCTTTCGCCGCATCCGTGATTCGCACCGTTTCCGGCCTCGAAGTCGAGGTCATGCATGCCTATGCCAGG 
ATCGTCGAGGGCACCGACCCGGAAGCGCTGCACGATCTGCGCGTCGCCGCCAGGCGCCTGCGCAGCCTGTTG 
AAACCGTTGCGCCTGGGGGCTCTGGCCGAGGACCTGGATCGCGCGGCGAAAGCCCTCGGGCAGGCCACCAAT 
CCGATCCGCGACATGGAAGTGATGGCGGCCGAGCTGGAGCGCCATGGCCTGCTGATTCCGGCTTCGCTGCGC 
AGGCAGGCGGTGCTCCGCTGGTATCGGCAGGCAGGGAGCAGTCCACAGATCAAGGATTTGCTGGACGCACTG 
GACGCCTGGCCGGACGGTGTCCGGCGGGCGATGACGGAAGGTCGCCTCGACGATCTCGAGGCGGAGGCGAGC 
AAGCGAATCAGGCACCAGTTGCGCAAGCTGCTGGCGGCGCTCGACGATCCCGGACACGATCTTCACGACATC 
CGCCTGTTGGTAAAGCGCGCACGTTATTCGCAGGAGGCCTACCCGGACCTCTGCCCTCTGCCGGGAAAGGTG 
CTCGACACGCTGAAAACGCTACAGACCATGCTGGGGGATTGGCACGACCACCAGCAATGGTGCCTCAGGGCC 
GAAGAGCAGGCCGACCTGCGCCCCCTGAGCGCGGAATGGCGCAGGTCCGAGGCCGCCGCCCTGGACCGGGCC 
GAGGAATCCGTTCGGCGCCTTGCCAGGTTGCTGGGGAAAGCCATCGGCCGCACCTGA