ViewGene

Locus Name:
GeneID:
Location:

GeneID:5166
TrivialName: PA14_01610
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01610
PAO1 Ortholog Locus:PA0131
Sequence Length:288
Protein Length:95
Start: 147341
Stop: 147054
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03521.1|AE004451_2 (AE004451) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 95/95 (100%), Positives = 95/95 (100%)
Sequence:
ATGAGCGGCCGCCCGCAAGCCGTACCCACCGTGCAGGTGGACAACGCCGAGGTGATCGTGACCGAATGGCGC
TTCGCCCCCGGCGCGGAAACCGGGCGCCACCGCCACGGACACGACTATGTGGTGGTACCGCTGACCGACGGC
ACGCTGCTGCTGGAAACCCCCGAGGGCGACCGCCACGCGCCGCTGGTCGCCGGACAGGCCTACTTCCGCAAG
GCCGGCGTCGAGCACAACGTGATCAACGCCAGCGCACACGAAGTGGTCTTCGTCGAGACCGAGATCAAGTAA
Translation:
MSGRPQAVPTVQVDNAEVIVTEWRFAPGAETGRHRHGHDYVVVPLTDGTLLLETPEGDRHAPLVAGQAYFRK
AGVEHNVINASAHEVVFVETEIK*
AnnotationID:5171GeneID:5166
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 05:05:37
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0131
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:10332
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27476
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33493
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:5166_cdd.html
URL:
Homologs By Global Alignment
Gene ID:5166

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7576 PA0131_tr translation of PA0131 95 99.99 99.99 0 499.0
194255 gb|AAG03521.1|AE004451_2 (AE004451) hypothetical protein PA0131 [Pseudomonas aeruginosa PAO1] 95 99.99 99.99 0 499.0
194258 emb|CAE42572.1| (BX640417) conserved hypothetical protein [Bordetella pertussis] [Bordetella pertussis Tohama I] 97 62.88 68.04 3 302.0
194256 emb|CAE32376.1| (BX640442) conserved hypothetical protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50] 107 57.94 62.61 12 307.0
194257 emb|CAE37726.1| (BX640430) conserved hypothetical protein [Bordetella parapertussis] 107 57.94 62.61 12 307.0
GC ORFID: 48168How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0131Glimmer Score:
Start: 5948680Stop: 5948393
Length: 288
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA0131 translation of PA0131Homolog Bit Score 196.0
Other Homologs: t_PA0131 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCGGCCGCCCGCAAGCCGTACCCACCGTGCAGGTGGACAACGCCGAGGTGATCGTGACCGAATGGCGC
TTCGCCCCCGGCGCGGAAACCGGGCGCCACCGCCACGGACACGACTATGTGGTGGTACCGCTGACCGACGGC
ACGCTGCTGCTGGAAACCCCCGAGGGCGACCGCCACGCGCCGCTGGTCGCCGGACAGGCCTACTTCCGCAAG
GCCGGCGTCGAGCACAACGTGATCAACGCCAGCGCACACGAAGTGGTCTTCGTCGAGACCGAGATCAAGTAA