ViewGene
Locus Name:
GeneID:
Location:

GeneID:5165
TrivialName: PA14_64470
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64470
PAO1 Ortholog Locus:PA4875
Sequence Length:297
Protein Length:98
Start: 5743847
Stop: 5744143
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08260.1|AE004901_2 (AE004901) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 98/98 (100%), Positives = 98/98 (100%)
Sequence:
ATGGGCGAGAACATCACCACCCGTGGCGTCGACCTGCTCGGCCTGCCCACCGGCACCCGCCTGCGCCTGGGG
GAAAGCGCCCTGGTCGAGCTGACCGGCCTGCGCAATCCCTGCTCGCAGCTGGACAACTACCAGCCCGGACTG
ACCGCCGCCGTGCTCGGCCGCGACGAACAGGGCAACCTGATTCGCAAGGCCGGGGTGATGGCGATCGTCCTG
GAAGACGGCGAGGTTCGCCCCGGCGACGCCATCGATATCCAGCTGCCACCCCTGCCGCACCGGGCCCTGGAG
AAGGTCTGA
Translation:
MGENITTRGVDLLGLPTGTRLRLGESALVELTGLRNPCSQLDNYQPGLTAAVLGRDEQGNLIRKAGVMAIVL
EDGEVRPGDAIDIQLPPLPHRALEKV*
AnnotationID:5170GeneID:5165
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 11:11:00
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4875
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10330




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27474




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35165




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5165_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5165
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7575
                           PA4875_tr
                           translation of PA4875
                           98
                           99.99
                           99.99
                           0
                           498.0
     

     
     
194249
                           gb|AAG08260.1|AE004901_2
                           (AE004901) hypothetical protein PA4875 [Pseudomonas aeruginosa PAO1]
                           98
                           99.99
                           99.99
                           0
                           498.0
     

     
     
194254
                           gb|AAF09730.1|AE001876_7
                           (AE001876) hypothetical protein [Deinococcus radiodurans] [Deinococcus radiodurans R1]
                           114
                           45.61
                           57.01
                           16
                           255.0
     

     
     
194253
                           dbj|BAC70489.1|
                           (AP005032) hypothetical protein [Streptomyces avermitilis MA-4680]
                           118
                           44.91
                           62.71
                           21
                           287.0
     

     
     
194251
                           emb|CAE31905.1|
                           (BX640441) conserved hypothetical protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           180
                           33.88
                           40.00
                           82
                           302.0
     

     






      

          
GC ORFID: 48167How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4875Glimmer Score: 

          
Start: 5007528Stop: 5007824

          
Length: 297


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4875 translation of PA4875Homolog Bit Score 196.0

          
Other Homologs:  t_PA4875 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGGCGAGAACATCACCACCCGTGGCGTCGACCTGCTCGGCCTGCCCACCGGCACCCGCCTGCGCCTGGGG 
GAAAGCGCCCTGGTCGAGCTGACCGGCCTGCGCAATCCCTGCTCGCAGCTGGACAACTACCAGCCCGGACTG 
ACCGCCGCCGTGCTCGGCCGCGACGAACAGGGCAACCTGATTCGCAAGGCCGGGGTGATGGCGATCGTCCTG 
GAAGACGGCGAGGTTCGCCCCGGCGACGCCATCGATATCCAGCTGCCACCCCTGCCGCACCGGGCCCTGGAG 
AAGGTCTGA