ViewGene

Locus Name:
GeneID:
Location:

GeneID:5164
TrivialName: PA14_22780
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22780
PAO1 Ortholog Locus:PA3202
Sequence Length:300
Protein Length:99
Start: 1980220
Stop: 1979921
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06590.1|AE004744_5 (AE004744) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 99/99 (100%), Positives = 99/99 (100%)
Sequence:
ATGCTCTACGCGATCATCGCCCGTGACATCCCCGCTTCCCAGGAACGCCGCCTGGCCAGCCGCCCGGCCCAC
CTGGCCCGTCTCGAACAGCTGAAGGAAGAAGGCCGCCTGGTACTCGCCGGCCCGCACCCGGCGATCGACAGC
AACGACCCGGGCGCCGCCGGCTTCACCGGCAGCCTGATCGTCGCCGAATTCGATTCCCTGGCCGCGGCGCAG
AGCTGGGCCGAGGCCGACCCCTACCGGGCCGCCGGGGTGTATGCCGAGGTGGTGGTCAAGCCGTTCAAGAAA
GTCCTGCCCTGA
Translation:
MLYAIIARDIPASQERRLASRPAHLARLEQLKEEGRLVLAGPHPAIDSNDPGAAGFTGSLIVAEFDSLAAAQ
SWAEADPYRAAGVYAEVVVKPFKKVLP*
AnnotationID:5169GeneID:5164
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 07:07:30
Gene Name:yciI
Confidence Code:3
GeneProduct:putative cytoplasmic protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:putative YCII-related domain protein
Functional Category Confidence Code:5
COGs:pfam03795
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70076.1|AE016647_6 (AE016790) YCII-related domain protein [Pseudomonas putida KT2440]
          Length = 110

 Score =  159 bits (403), Expect = 2e-39
 Identities = 78/99 (78%), Positives = 90/99 (90%)

>gb|AAL20656.1| (AE008777) putative cytoplasmic protein [Salmonella typhimurium
          LT2]
          Length = 98

 Score =  139 bits (351), Expect = 2e-33
 Identities = 67/97 (69%), Positives = 81/97 (83%)

>gb|AAB60158.1| (U24206) yciI gene product [Escherichia coli]
          Length = 98

 Score =  139 bits (349), Expect = 4e-33
 Identities = 68/97 (70%), Positives = 80/97 (82%)
Structural Features:
pfam03795, YCII, YCII-related domain.  A strongly conserved histidine 
and a aspartate suggest that the domain has an enzymatic function.
CD-Length = 85 residues, 100.0% aligned
Score = 98.8 bits (246), Expect = 9e-23
Identities = 56/90 (62%), Positives = 62/90 (68%), Gaps = 5/90 (5%)
Genomic Context:
Comment:
ReferenceID:10328
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27472
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32341
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:5164_cdd.html
URL:
Homologs By Global Alignment
Gene ID:5164

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7574 PA3202_tr translation of PA3202 99 99.99 99.99 0 497.0
194209 gb|AAG06590.1|AE004744_5 (AE004744) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 99 99.99 99.99 0 497.0
194211 gb|AAO55328.1| (AE016862) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 99 74.74 88.88 0 388.0
194210 gb|AAN70076.1|AE016647_6 (AE016790) YCII-related domain protein [Pseudomonas putida KT2440] 110 70.90 81.81 11 403.0
194212 gb|AAN56048.1|AE015740_2 (AE015740) conserved hypothetical protein [Shewanella oneidensis MR-1] 99 70.70 86.86 0 371.0
GC ORFID: 48166How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3202Glimmer Score:
Start: 2973711Stop: 2974010
Length: 300
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3202 translation of PA3202Homolog Bit Score 196.0
Other Homologs: psyr_15may02_Scaffold12_revised_gene2002 (ORF: BLASTX 154.0), t_PA3202 (ORF: GLIMMER)
GC ORF Sequence
ATGCTCTACGCGATCATCGCCCGTGACATCCCCGCTTCCCAGGAACGCCGCCTGGCCAGCCGCCCGGCCCAC
CTGGCCCGTCTCGAACAGCTGAAGGAAGAAGGCCGCCTGGTACTCGCCGGCCCGCACCCGGCGATCGACAGC
AACGACCCGGGCGCCGCCGGCTTCACCGGCAGCCTGATCGTCGCCGAATTCGATTCCCTGGCCGCGGCGCAG
AGCTGGGCCGAGGCCGACCCCTACCGGGCCGCCGGGGTGTATGCCGAGGTGGTGGTCAAGCCGTTCAAGAAA
GTCCTGCCCTGA