ViewGene

Locus Name:
GeneID:
Location:

GeneID:5163
TrivialName: PA14_38290
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38290
PAO1 Ortholog Locus:PA2029
Sequence Length:300
Protein Length:99
Start: 3413924
Stop: 3413625
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05417.1|AE004629_6 (AE004629) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 97/98 (98%), Positives = 97/98 (98%)
Sequence:
ATGACCATCAGCAAGACCAAGTCCAGCTTCTACCGCCGCCTCTACGTCGCCTACCTGATCGACAGCGGCATC
GCCAGCGTGCCGGAGATCATGGCCGCCACCGGCATGCCCCGGCGTACCGCCCAGGACACCATCGCCGCGCTG
GAGGAACTGGACATCGTCTGTGAGTTCGAGCAGCGGGAGGGTGCGCGCAACCACCAGGGCGGCTATGTCATC
CGCGACTGGGGGGCGGTACGGCGGGAGTGGGTGGTCGAGCAGCATCGGCGAATCGCGGCGGCGCTGGAGTAT
CCGGCGCAATGA
Translation:
MTISKTKSSFYRRLYVAYLIDSGIASVPEIMAATGMPRRTAQDTIAALEELDIVCEFEQREGARNHQGGYVI
RDWGAVRREWVVEQHRRIAAALEYPAQ*
AnnotationID:5168GeneID:5163
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 21:09:08
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2029
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:10326
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27470
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32669
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:5163_cdd.html
URL:
Homologs By Global Alignment
Gene ID:5163

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7573 PA2029_tr translation of PA2029 99 97.97 97.97 0 498.0
194206 gb|AAG05417.1|AE004629_6 (AE004629) hypothetical protein PA2029 [Pseudomonas aeruginosa PAO1] 99 97.97 97.97 0 498.0
194207 gb|AAN70524.1|AE016694_7 (AE016792) conserved hypothetical protein [Pseudomonas putida KT2440] 100 67.00 78.00 3 346.0
194208 gb|AAO58440.1| (AE016874) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 120 55.83 63.33 23 337.0
GC ORFID: 48165How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2029Glimmer Score:
Start: 1539986Stop: 1540285
Length: 300
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2029 translation of PA2029Homolog Bit Score 196.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3371 (ORF: BLASTX 144.0)
GC ORF Sequence
ATGACCATCAGCAAGACCAAGTCCAGCTTCTACCGCCGCCTCTACGTCGCCTACCTGATCGACAGCGGCATC
GCCAGCGTGCCGGAGATCATGGCCGCCACCGGCATGCCCCGGCGTACCGCCCAGGACACCATCGCCGCGCTG
GAGGAACTGGACATCGTCTGTGAGTTCGAGCAGCGGGAGGGTGCGCGCAACCACCAGGGCGGCTATGTCATC
CGCGACTGGGGGGCGGTACGGCGGGAGTGGGTGGTCGAGCAGCATCGGCGAATCGCGGCGGCGCTGGAGTAT
CCGGCGCAATGA