ViewGene
Locus Name:
GeneID:
Location:

GeneID:5162
TrivialName: PA14_50870
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50870
PAO1 Ortholog Locus:PA1042
Sequence Length:300
Protein Length:99
Start: 4522213
Stop: 4521914
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04431.1|AE004536_10 (AE004536) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 97/99 (97%), Positives = 98/99 (98%)
Sequence:
ATGAAAGCGTTTCTCGGGCTGGGCAAGCTCGTGACCCTGGTGTTCTGGGGCGCGGTGCTGGTCAATCTGCTG
CATCCGTTCGCCTATCCGCTGAACTGGCTGTTGTCGATAGCCGGCGGCCTGATCCTGTTGATCCACCTGATC
GAGATTCTCGTCCTCGGACGACGCCTGAAAGCGCGTGCGCATCCCTGGCTGGACCGTCTCCAGGTCTTGCTG
TTCGGGGTCTTCCACATGCTTGCGTTGCCGGCGCTGAGCCCGGCCAGCGAGTTGCCGCGGGACAAGGAGGAC
GATCATGCGTAA
Translation:
MKAFLGLGKLVTLVFWGAVLVNLLHPFAYPLNWLLSIAGGLILLIHLIEILVLGRRLKARAHPWLDRLQVLL
FGVFHMLALPALSPASELPRDKEDDHA*
AnnotationID:5167GeneID:5162
AnnotatorUID: danlee
Modification Date/Time: 2004-05-19 11:11:20
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1042
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10324




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27468




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5162
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7572
                           PA1042_tr
                           translation of PA1042
                           99
                           97.97
                           98.98
                           0
                           499.0
     

     
     
194205
                           gb|AAG04431.1|AE004536_10
                           (AE004536) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           99
                           97.97
                           98.98
                           0
                           499.0
     

     






      

          
GC ORFID: 48164How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1042Glimmer Score: 

          
Start: 431695Stop: 431994

          
Length: 300


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA1042 translation of PA1042Homolog Bit Score 196.0

          
Other Homologs:  

          
GC ORF Sequence

           
ATGAAAGCGTTTCTCGGGCTGGGCAAGCTCGTGACCCTGGTGTTCTGGGGCGCGGTGCTGGTCAATCTGCTG 
CATCCGTTCGCCTATCCGCTGAACTGGCTGTTGTCGATAGCCGGCGGCCTGATCCTGTTGATCCACCTGATC 
GAGATTCTCGTCCTCGGACGACGCCTGAAAGCGCGTGCGCATCCCTGGCTGGACCGTCTCCAGGTCTTGCTG 
TTCGGGGTCTTCCACATGCTTGCGTTGCCGGCGCTGAGCCCGGCCAGCGAGTTGCCGCGGGACAAGGAGGAC 
GATCATGCGTAA