ViewGene
Locus Name:
GeneID:
Location:

GeneID:5161
TrivialName: PA14_03290
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_03290
PAO1 Ortholog Locus:PA1937
Sequence Length:309
Protein Length:102
Start: 298567
Stop: 298875
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP82950.1| (AY273870) putative transposase [Pseudomonas aeruginosa]
Identities = 102/102 (100%), Positives = 102/102 (100%)
Sequence:
ATGAGCAAGCAACGACGTACGTTTTCCGCCGAGTTCAAACGAGAGGCCGCGGCCCTGGTGTTGGACCAAGGC
TACAGCCATATCGACGCCTGCCGTTCGCTGGGGGTGGTGGATTCGGCCTTGCGCCGTTGGGTGAAGCAGCTC
GAGGCGGAGCGCCAGGGTGTGACCCCGAAGAGCAAGGCGTTGACGCCTGAGCAGCAAAAGATCCAGGAGCTG
GAAGCCCGGATCAACCGGTTGGAGCGGGAGAAAGCGATATTAAAAAAGGCTACCGCTCTCTTGATGTCGGAC
GAACTCGATCGTACGCGCTGA
Translation:
MSKQRRTFSAEFKREAAALVLDQGYSHIDACRSLGVVDSALRRWVKQLEAERQGVTPKSKALTPEQQKIQEL
EARINRLEREKAILKKATALLMSDELDRTR*
AnnotationID:5166GeneID:5161
AnnotatorUID: danlee
Modification Date/Time: 2005-10-04 17:05:36
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1937
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|15596176|ref|NP_249670.1|  hypothetical protein PA0979 [Pseudomonas aeruginosa PAO1]
     Length=102
     Score =  196 bits (497),  Expect = 2e-49
     Identities = 101/102 (99%), Positives = 102/102 (100%), Gaps = 0/102 (0%)

gi|71554558|gb|AAZ33769.1|  ISPsy24, transposase orfA [Pseudomonas syringae pv. phaseolicola 1448A]
     Length=102
     Score =  166 bits (421),  Expect = 2e-40
     Identities = 86/102 (84%), Positives = 94/102 (92%), Gaps = 0/102 (0%)

gi|49188529|ref|YP_025627.1|  IS222 transposase protein orfA [Pseudomonas syringae pv. maculicola]
     Length=102
     Score =  166 bits (419),  Expect = 3e-40
     Identities = 85/102 (83%), Positives = 94/102 (92%), Gaps = 0/102 (0%)






 
Structural Features:
pfam01527, Transposase_8, Transposase.
             CD-Length = 80 residues, 100.0% aligned
             Score = 56.8 bits (137), Expect = 6e-10

COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].
             CD-Length = 116 residues,  87.1% aligned
             Score = 52.5 bits (125), Expect = 1e-08






   
Genomic Context:






   
Comment:


















    ReferenceID:10322




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27466




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5161
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
194139
                           gb|AAP82950.1|
                           (AY273870) putative transposase [Pseudomonas aeruginosa]
                           102
                           99.99
                           99.99
                           0
                           500.0
     

     
     
7570
                           PA0979_tr
                           translation of PA0979
                           102
                           99.01
                           99.99
                           0
                           497.0
     

     
     
194142
                           gb|AAA52747.1|
                           (U00100) unknown [Pseudomonas aeruginosa]
                           102
                           99.01
                           99.99
                           0
                           497.0
     

     
     
194141
                           gb|AAG04368.1|AE004531_5
                           (AE004531) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           102
                           99.01
                           99.99
                           0
                           497.0
     

     
     
194140
                           gb|AAO47354.1|
                           (AY180395) putative transposase subunit [Pseudomonas aeruginosa]
                           102
                           99.01
                           99.99
                           0
                           497.0
     

     






      

          
GC ORFID: 48163How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RS05Glimmer Score: 

          
Start: 6099908Stop: 6100216

          
Length: 309


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_RS05 103 Homolog: PA0979 / Putative transposase; recombination-related / P. aeruginosa / PAO1 (AAG04368) translation of RS05Homolog Bit Score 197.0

          
Other Homologs:  t_PA0979 (ORF: BLASTX 196.0), t_PA1937 (ORF: BLASTX 192.0), psyr_15may02_Scaffold3_revised_gene4320 (ORF: BLASTX 111.0), psyr_15may02_Scaffold2_revised_gene3486 (ORF: BLASTX 111.0), psyr_15may02_Scaffold1_revised_gene1439 (ORF: BLASTX 111.0), t_RS05 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCAAGCAACGACGTACGTTTTCCGCCGAGTTCAAACGAGAGGCCGCGGCCCTGGTGTTGGACCAAGGC 
TACAGCCATATCGACGCCTGCCGTTCGCTGGGGGTGGTGGATTCGGCCTTGCGCCGTTGGGTGAAGCAGCTC 
GAGGCGGAGCGCCAGGGTGTGACCCCGAAGAGCAAGGCGTTGACGCCTGAGCAGCAAAAGATCCAGGAGCTG 
GAAGCCCGGATCAACCGGTTGGAGCGGGAGAAAGCGATATTAAAAAAGGCTACCGCTCTCTTGATGTCGGAC 
GAACTCGATCGTACGCGCTGA