ViewGene

Locus Name:
GeneID:
Location:

GeneID:516
TrivialName: PA14_68820
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68820
PAO1 Ortholog Locus:PA5210
Sequence Length:1785
Protein Length:594
Start: 6137440
Stop: 6139224
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08595.1|AE004934_2 (AE004934) probable secretion pathway ATPase [Pseudomonas aeruginosa PAO1]
Identities = 594/594 (100%), Positives = 594/594 (100%)
Sequence:
ATGTCCGTGTTCGCCACCGCCGCCCAGGACCGCCTGCTGGACCTCGGCGACCTGCTCCGCGAGCTGGTCGCC
CAGGGCCGGGTCGGGCAGGAGCAGGCCGAACAGTGCCTGGCGATCCGCCGCAGCGCAGTGCGCAACCAGCAG
CATCCGCTGGAGTTCCTCGCCGCGCAGCAGGTCGAGGATCTCAAGCGCCCCGGACGCAAGCTCGACCTGGAG
ACCCTCACCCAGTGGCTGGCCGAGTACGCCGGCCAGCCCTACCTGCGCATCGACCCGCTGAAGATCGACGTC
GCCGCGGTGACTCCGCTGATGTCCTACGCCTTCGCCCAGCGCCATGGCATCCTCGCCGTCGCGCTGAGTCCG
GAGGAAGTCACCATCGCCAGCGCCCAGCCCTTCGTACAGGGCTGGGAAAGCAACCTGGTGCATGTGCTCAAG
CGACCGATCAAGCGGGTGGTGGCGAACCCGGCGGACATCCAGCGCTACACCGTCGAGTTCTTCCGCCTGGCC
CGCTCGGTCAGCGGCGCCACCTCGCCGGACCAGAAGATCAGCGGCGTCGGCAACTTCGAGCAGTTGCTCAAC
CTCGGCGCCGCCGACCAGGAGCCGGACGCCAACGACGCGCACATCGTCACCATCGTCGACTGGCTGTTCCAG
TACGCCTTCCAGCAGCGCGCCAGCGACATCCACATCGAGCCGCGCCGCGAGCAGGGCACCGTGCGCTTCCGT
ATCGACGGCGTGCTGCACAACGTCTACCAGTTCCCGCCGCAGGTGACCATGGCGGTGGTCAGCCGCCTGAAG
TCGCTGGGACGGATGAACGTGGCGGAGAAACGCAAGCCGCAGGACGGCCGGGTCAAGACCAAGACCCCGGAC
GGCGCCGAGGTGGAGCTGCGCCTGTCGACCCTGCCCACCGCCTTCGGCGAGAAGATGGTGATGCGCATCTTC
GACCCCGAGGTGCTGCTCAAGAGCTTCGACCAGCTCGGCTTCTCCGCCGACGACCTGCGCCGCTGGCAGAGC
ATGACCAGCCAGCCCAACGGCATCATCCTGGTCACCGGCCCCACCGGCTCGGGCAAGACCACCACGCTCTAC
ACCACGCTCAAGCAACTGGCCACCGATGAGGTGAACGTCTGCACCATCGAGGACCCGATCGAGATGATCGAG
CCCTCGTTCAACCAGATGCAGGTCCAGCACAACATCGACCTGACCTTCGCCAGCGGCGTACGCGCCCTGCTG
CGGCAGGACCCGGACATCATCATGGTCGGCGAGATCCGCGACCTGGAGACCGCCGAGATGGCGATCCAGGCG
GCGCTCACCGGGCACCTGGTGCTCTCCACCCTGCACACCAACGACTCGCCCACGGCGATCACCCGCCTGCTC
GAACTGGGCGTACCCTACTACCTGATCCGCGCCACGGTGCTAGGGGTCATGGCCCAACGCCTGGTGCGCACG
CTCTGCCCGCACTGCAAGGCGCCGATGCAACTGGCGGACAGCGACTGGCACGAACTGACCCGCCCCTGGAGC
GCCCCGCCGCCCAGCGGCGCGCACCAGGCCGTGGGTTGCCTGGAGTGCCGCGACACCGGCTATCGCGGGCGC
GCCGGCGTCTATGAAATCATGCTGCTCAGCGATAGCCTGAAAGAACTGATCACCGCCGACACCGACCTGGTC
GCCCTGCGCCGCCAGGCGTACAAAGAAGGCACCCGCAGCCTGCGCCTGTCCGGCGCGCAGAAGGTCGCCGCG
GGTATCAGTACGCTGGAGGAAGTACTGCGGGTGACCCCGCAGAGCGAACAGAAGTAG
Translation:
MSVFATAAQDRLLDLGDLLRELVAQGRVGQEQAEQCLAIRRSAVRNQQHPLEFLAAQQVEDLKRPGRKLDLE
TLTQWLAEYAGQPYLRIDPLKIDVAAVTPLMSYAFAQRHGILAVALSPEEVTIASAQPFVQGWESNLVHVLK
RPIKRVVANPADIQRYTVEFFRLARSVSGATSPDQKISGVGNFEQLLNLGAADQEPDANDAHIVTIVDWLFQ
YAFQQRASDIHIEPRREQGTVRFRIDGVLHNVYQFPPQVTMAVVSRLKSLGRMNVAEKRKPQDGRVKTKTPD
GAEVELRLSTLPTAFGEKMVMRIFDPEVLLKSFDQLGFSADDLRRWQSMTSQPNGIILVTGPTGSGKTTTLY
TTLKQLATDEVNVCTIEDPIEMIEPSFNQMQVQHNIDLTFASGVRALLRQDPDIIMVGEIRDLETAEMAIQA
ALTGHLVLSTLHTNDSPTAITRLLELGVPYYLIRATVLGVMAQRLVRTLCPHCKAPMQLADSDWHELTRPWS
APPPSGAHQAVGCLECRDTGYRGRAGVYEIMLLSDSLKELITADTDLVALRRQAYKEGTRSLRLSGAQKVAA
GISTLEEVLRVTPQSEQK*
AnnotationID:525GeneID:516
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 05:05:35
Gene Name:
Confidence Code:3
GeneProduct:putative general secretory pathway related protein
Cell Localization:()
Synonyms:gspE
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:putative type IV pilus biogenesis protein
Functional Category Confidence Code:5
COGs:COG2804,cd01129,pfam00437,COG2805
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO53864.1| (AE016857) type IV pilus biogenesis protein [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 594

 Score =  972 bits (2512), Expect = 0.0
 Identities = 479/594 (80%), Positives = 540/594 (90%)

>gb|AAM43309.1| (AE012532) general secretory pathway related protein [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
          Length = 603

 Score =  650 bits (1678), Expect = 0.0
 Identities = 333/577 (57%), Positives = 433/577 (75%), Gaps = 8/577 (1%)

>gb|AAN70755.1|AE016719_6 (AE016793) type II secretion system protein [Pseudomonas putida
           KT2440]
          Length = 557

 Score =  610 bits (1572), Expect = e-173
 Identities = 325/575 (56%), Positives = 404/575 (70%), Gaps = 28/575 (4%)
Structural Features:
COG2804, PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, 
ATPase PilB 
[Cell motility and secretion / Intracellular trafficking and secretion]
CD-Length = 500 residues,  97.4% aligned
Score =  516 bits (1329), Expect = 3e-147
Identities = 218/498 (43%), Positives = 311/498 (62%), Gaps = 15/498 (3%)

cd01129, PulE-GspE, PulE/GspE The type II secretory pathway is the main terminal branch 
of the general secretory pathway (GSP).
CD-Length = 264 residues, 100.0% aligned
Score =  336 bits (862), Expect = 6e-93

pfam00437, GSPII_E, Type II/IV secretion system protein. 
CD-Length = 283 residues,  92.9% aligned
Score =  224 bits (572), Expect = 2e-59
Identities = 110/272 (40%), Positives = 152/272 (55%), Gaps = 19/272 (6%)

COG2805, PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT 
[Cell motility and secretion / Intracellular trafficking and secretion]
CD-Length = 353 residues,  96.0% aligned
Score =  166 bits (421), Expect = 8e-42
Identities = 107/394 (27%), Positives = 177/394 (44%), Gaps = 69/394 (17%)
Genomic Context:
Comment:
ReferenceID:1035
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18177
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34845
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:516_cdd.html
URL:
Homologs By Global Alignment
Gene ID:516

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
907 PA5210_tr translation of PA5210 594 99.99 99.99 0 3021.0
36751 gb|AAG08595.1|AE004934_2 (AE004934) probable secretion pathway ATPase [Pseudomonas aeruginosa PAO1] 594 99.99 99.99 0 3021.0
36752 gb|AAO53864.1| (AE016857) type IV pilus biogenesis protein [Pseudomonas syringae pv. tomato str. DC3000] 594 80.63 90.90 0 2512.0
36754 gb|AAM39047.1| (AE012072) general secretory pathway related protein [Xanthomonas axonopodis pv. citri str. 306] 603 55.55 71.97 29 1680.0
36753 gb|AAM43309.1| (AE012532) general secretory pathway related protein [Xanthomonas campestris pv. campestris str. ATCC 33913] 608 55.42 72.36 19 1687.0
GC ORFID: 43518How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5210Glimmer Score:
Start: 5401126Stop: 5402910
Length: 1785
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA5210 translation of PA5210Homolog Bit Score 1168.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3914 (ORF: BLASTX 972.0), t_PA3103 (ORF: BLASTX 350.0), t_PA0686 (ORF: BLASTX 334.0), t_PA4526 (ORF: BLASTX 321.0), psyr_15may02_Scaffold15_revised_gene2535 (ORF: BLASTX 316.0), t_PA5210 (ORF: GLIMMER)
GC ORF Sequence
ATGTCCGTGTTCGCCACCGCCGCCCAGGACCGCCTGCTGGACCTCGGCGACCTGCTCCGCGAGCTGGTCGCC
CAGGGCCGGGTCGGGCAGGAGCAGGCCGAACAGTGCCTGGCGATCCGCCGCAGCGCAGTGCGCAACCAGCAG
CATCCGCTGGAGTTCCTCGCCGCGCAGCAGGTCGAGGATCTCAAGCGCCCCGGACGCAAGCTCGACCTGGAG
ACCCTCACCCAGTGGCTGGCCGAGTACGCCGGCCAGCCCTACCTGCGCATCGACCCGCTGAAGATCGACGTC
GCCGCGGTGACTCCGCTGATGTCCTACGCCTTCGCCCAGCGCCATGGCATCCTCGCCGTCGCGCTGAGTCCG
GAGGAAGTCACCATCGCCAGCGCCCAGCCCTTCGTACAGGGCTGGGAAAGCAACCTGGTGCATGTGCTCAAG
CGACCGATCAAGCGGGTGGTGGCGAACCCGGCGGACATCCAGCGCTACACCGTCGAGTTCTTCCGCCTGGCC
CGCTCGGTCAGCGGCGCCACCTCGCCGGACCAGAAGATCAGCGGCGTCGGCAACTTCGAGCAGTTGCTCAAC
CTCGGCGCCGCCGACCAGGAGCCGGACGCCAACGACGCGCACATCGTCACCATCGTCGACTGGCTGTTCCAG
TACGCCTTCCAGCAGCGCGCCAGCGACATCCACATCGAGCCGCGCCGCGAGCAGGGCACCGTGCGCTTCCGT
ATCGACGGCGTGCTGCACAACGTCTACCAGTTCCCGCCGCAGGTGACCATGGCGGTGGTCAGCCGCCTGAAG
TCGCTGGGACGGATGAACGTGGCGGAGAAACGCAAGCCGCAGGACGGCCGGGTCAAGACCAAGACCCCGGAC
GGCGCCGAGGTGGAGCTGCGCCTGTCGACCCTGCCCACCGCCTTCGGCGAGAAGATGGTGATGCGCATCTTC
GACCCCGAGGTGCTGCTCAAGAGCTTCGACCAGCTCGGCTTCTCCGCCGACGACCTGCGCCGCTGGCAGAGC
ATGACCAGCCAGCCCAACGGCATCATCCTGGTCACCGGCCCCACCGGCTCGGGCAAGACCACCACGCTCTAC
ACCACGCTCAAGCAACTGGCCACCGATGAGGTGAACGTCTGCACCATCGAGGACCCGATCGAGATGATCGAG
CCCTCGTTCAACCAGATGCAGGTCCAGCACAACATCGACCTGACCTTCGCCAGCGGCGTACGCGCCCTGCTG
CGGCAGGACCCGGACATCATCATGGTCGGCGAGATCCGCGACCTGGAGACCGCCGAGATGGCGATCCAGGCG
GCGCTCACCGGGCACCTGGTGCTCTCCACCCTGCACACCAACGACTCGCCCACGGCGATCACCCGCCTGCTC
GAACTGGGCGTACCCTACTACCTGATCCGCGCCACGGTGCTAGGGGTCATGGCCCAACGCCTGGTGCGCACG
CTCTGCCCGCACTGCAAGGCGCCGATGCAACTGGCGGACAGCGACTGGCACGAACTGACCCGCCCCTGGAGC
GCCCCGCCGCCCAGCGGCGCGCACCAGGCCGTGGGTTGCCTGGAGTGCCGCGACACCGGCTATCGCGGGCGC
GCCGGCGTCTATGAAATCATGCTGCTCAGCGATAGCCTGAAAGAACTGATCACCGCCGACACCGACCTGGTC
GCCCTGCGCCGCCAGGCGTACAAAGAAGGCACCCGCAGCCTGCGCCTGTCCGGCGCGCAGAAGGTCGCCGCG
GGTATCAGTACGCTGGAGGAAGTACTGCGGGTGACCCCGCAGAGCGAACAGAAGTAG