ViewGene
Locus Name:
GeneID:
Location:

GeneID:5159
TrivialName: PA14_02570
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02570
PAO1 Ortholog Locus:PA0210
Sequence Length:300
Protein Length:99
Start: 229930
Stop: 230229
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03599.1|AE004459_3 (AE004459) malonate decarboxylase delta subunit [Pseudomonas aeruginosa PAO1]
Identities = 99/99 (100%), Positives = 99/99 (100%)
Sequence:
ATGGAAACCCTGACCTTCGAATTTCCCGCCGGCGCTCCGGCGCGCGGTCGCGCCCTGGCCGGCTGCGTCGGC
TCCGGCGACCTGGAGGTGCTGCTCGAGCCGGCCGCCGGAGGCGCGCTGAGCATCCAGGTGGTGACCTCGGTA
AACGGCAGCGGCCCGCGCTGGCAACAACTCTTCGCGCGGGTCTTCGCGGCGTCCACGGCGCCGGCCGCGTCG
ATCCGCATCCACGATTTCGGCGCCACTCCCGGGGTGGTCCGCCTGCGCCTGGAGCAGGCACTGGAGGAGGCT
GGCCATGACTGA
Translation:
METLTFEFPAGAPARGRALAGCVGSGDLEVLLEPAAGGALSIQVVTSVNGSGPRWQQLFARVFAASTAPAAS
IRIHDFGATPGVVRLRLEQALEEAGHD*
AnnotationID:5164GeneID:5159
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 12:12:03
Gene Name:mdcC
Confidence Code:2
GeneProduct: malonate decarboxylase delta subunit
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:acyl carrier protein
Functional Category Confidence Code:5
COGs:pfam06857
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58512.1| (AE016874) malonate decarboxylase, delta subunit [Pseudomonas
          syringae pv. tomato str. DC3000]
          Length = 99

 Score =  145 bits (367), Expect = 3e-35
 Identities = 73/99 (73%), Positives = 78/99 (78%)

>dbj|BAA36206.1| (AB017138) delta subunit of malonate decarboxylase [Pseudomonas
          putida]
          Length = 99

 Score =  140 bits (352), Expect = 2e-33
 Identities = 67/99 (67%), Positives = 73/99 (73%)








 
Structural Features:
pfam06857, MdcD, Malonate decarboxylase delta subunit (MdcD).
CD-Length = 99 residues, 100.0% aligned
Score =  135 bits (340), Expect = 1e-33 
Identities = 72/99 (72%), Positives = 75/99 (75%), Gaps = 2/99 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10318




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27462




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33575




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5159_cdd.html


    		




 
URL:

















    ReferenceID:35466




  
Author/Investigator(s):
        Chohnan S, Kurusu Y, Nishihara H, Takamura Y.





  
Title:
        Cloning and characterization of mdc genes encoding malonate decarboxylase from Pseudomonas putida.




  
PubMed:
        10339824


MedLine:
        




    
Source:
FEMS Microbiol Lett. 1999 May 15;174(2):311-9.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10339824

















    ReferenceID:35470




  
Author/Investigator(s):
        Koo JH, Jung SB, Byun HS, Kim YS.





  
Title:
        Cloning and sequencing of genes encoding malonate decarboxylase in Acinetobacter calcoaceticus.




  
PubMed:
        9375791


MedLine:
        




    
Source:
Biochim Biophys Acta. 1997 Oct 9;1354(1):49-54.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9375791









           
Homologs By Global Alignment 

           

       



     
Gene ID:5159
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7567
                           PA0210_tr
                           translation of PA0210
                           99
                           99.99
                           99.99
                           0
                           500.0
     

     
     
194069
                           gb|AAG03599.1|AE004459_3
                           (AE004459) malonate decarboxylase delta subunit [Pseudomonas aeruginosa PAO1]
                           99
                           99.99
                           99.99
                           0
                           500.0
     

     
     
194070
                           gb|AAO58512.1|
                           (AE016874) malonate decarboxylase, delta subunit [Pseudomonas syringae pv. tomato str. DC3000]
                           99
                           73.73
                           78.78
                           0
                           367.0
     

     
     
194071
                           dbj|BAA36206.1|
                           (AB017138) delta subunit of malonate decarboxylase [Pseudomonas putida]
                           99
                           67.67
                           73.73
                           0
                           352.0
     

     
     
194072
                           gb|AAC45455.1|
                           (U95087) MdcC [Klebsiella pneumoniae]
                           99
                           53.53
                           64.64
                           0
                           266.0
     

     






      

          
GC ORFID: 48161How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0210Glimmer Score: 

          
Start: 6031271Stop: 6031570

          
Length: 300


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0210 translation of PA0210Homolog Bit Score 197.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3319 (ORF: BLASTX 147.0), t_PA0210 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAAACCCTGACCTTCGAATTTCCCGCCGGCGCTCCGGCGCGCGGTCGCGCCCTGGCCGGCTGCGTCGGC 
TCCGGCGACCTGGAGGTGCTGCTCGAGCCGGCCGCCGGAGGCGCGCTGAGCATCCAGGTGGTGACCTCGGTA 
AACGGCAGCGGCCCGCGCTGGCAACAACTCTTCGCGCGGGTCTTCGCGGCGTCCACGGCGCCGGCCGCGTCG 
ATCCGCATCCACGATTTCGGCGCCACTCCCGGGGTGGTCCGCCTGCGCCTGGAGCAGGCACTGGAGGAGGCT 
GGCCATGACTGA