ViewGene
Locus Name:
GeneID:
Location:

GeneID:5157
TrivialName: PA14_47450
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47450
PAO1 Ortholog Locus:PA1295
Sequence Length:294
Protein Length:97
Start: 4228146
Stop: 4227853
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04684.1|AE004559_3 (AE004559) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 96/97 (98%), Positives = 97/97 (100%)
Sequence:
ATGAAACGAATCTGTTCCGTCTACAAGAGCCCGCGCAAGAACGAGATGTACCTCTACGTCGACAAGCGCGAG
GCGTTGAGCCGCGTGCCCGAGGCCCTGCTGGTGCCGTTCGGCGCGCCGCAACATGTCTTCGACCTGCTGCTC
ACCCCCGAGCGCCAACTGGCCCGCGAGGATGTCGCCAAGGTCCTGGAGAACATCGAGAAGCAGGGCTTCCAC
CTGCAGATGCCGCCGGGCGAAGAAGAGTACATCGAGCATCTCCCGGAAGAGTTGCTGCGCATGAACGACCCG
CTCTGA
Translation:
MKRICSVYKSPRKNEMYLYVDKREALSRVPEALLVPFGAPQHVFDLLLTPERQLAREDVAKVLENIEKQGFH
LQMPPGEEEYIEHLPEELLRMNDPL*
AnnotationID:5162GeneID:5157
AnnotatorUID: diggins
Modification Date/Time: 2005-02-22 20:08:10
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:ycgL
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN80092.1|AE016759_366 (AE016759) Protein ycgL [Escherichia coli CFT073]
          Length = 108

 Score = 72.0 bits (175), Expect = 6e-13
 Identities = 33/83 (39%), Positives = 55/83 (66%), Gaps = 1/83 (1%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10314




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27458




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5157
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7565
                           PA1295_tr
                           translation of PA1295
                           97
                           98.96
                           99.99
                           0
                           500.0
     

     
     
194065
                           gb|AAG04684.1|AE004559_3
                           (AE004559) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           97
                           98.96
                           99.99
                           0
                           500.0
     

     
     
194066
                           gb|AAN70163.1|AE016655_8
                           (AE016791) conserved hypothetical protein [Pseudomonas putida KT2440]
                           97
                           76.28
                           85.56
                           0
                           397.0
     

     
     
194067
                           gb|AAO57387.1|
                           (AE016870) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           97
                           68.04
                           83.50
                           0
                           370.0
     

     






      

          
GC ORFID: 48159How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1295Glimmer Score: 

          
Start: 725763Stop: 726056

          
Length: 294


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1295 translation of PA1295Homolog Bit Score 197.0

          
Other Homologs:  psyr_15may02_Scaffold10_revised_gene1736 (ORF: BLASTX 145.0)

          
GC ORF Sequence

           
ATGAAACGAATCTGTTCCGTCTACAAGAGCCCGCGCAAGAACGAGATGTACCTCTACGTCGACAAGCGCGAG 
GCGTTGAGCCGCGTGCCCGAGGCCCTGCTGGTGCCGTTCGGCGCGCCGCAACATGTCTTCGACCTGCTGCTC 
ACCCCCGAGCGCCAACTGGCCCGCGAGGATGTCGCCAAGGTCCTGGAGAACATCGAGAAGCAGGGCTTCCAC 
CTGCAGATGCCGCCGGGCGAAGAAGAGTACATCGAGCATCTCCCGGAAGAGTTGCTGCGCATGAACGACCCG 
CTCTGA