ViewGene
Locus Name:
GeneID:
Location:

GeneID:5156
TrivialName: PA14_54680
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54680
PAO1 Ortholog Locus:PA0742
Sequence Length:309
Protein Length:102
Start: 4848072
Stop: 4848380
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04131.1|AE004509_6 (AE004509) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 102/102 (100%), Positives = 102/102 (100%)
Sequence:
GTGACCCACGAGCTGCTCTACGGACTCTGCGCGCTCTACCTGCAGATGGCGCTGGCCTTCGCTCTCGCCTAC
TACATGGTCGAACAGATGCAGCCTGCCAGCTTCATCGCCAGCCATGGCGCACTCGGCCTGGATACCTTCGTC
TACTACAGCCTGGTGACCCTGACCACCGTGGGCTACGGCGACATCCAGGCGATCAACCCGCTGGCGCGCCTG
CTGGCCGGCAGCGAAGGAGTGATCGGCGTCCTGTTCATCGCCCTCGCCGTGGCCCGCAGCCTGACCCTGATG
AGCGACAGCGAGGAGGTCTGA
Translation:
MTHELLYGLCALYLQMALAFALAYYMVEQMQPASFIASHGALGLDTFVYYSLVTLTTVGYGDIQAINPLARL
LAGSEGVIGVLFIALAVARSLTLMSDSEEV*
AnnotationID:5161GeneID:5156
AnnotatorUID: danlee
Modification Date/Time: 2004-03-26 17:05:52
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0742
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:15260




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27456




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5156
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7564
                           PA0742_tr
                           translation of PA0742
                           102
                           99.99
                           99.99
                           0
                           501.0
     

     
     
194064
                           gb|AAG04131.1|AE004509_6
                           (AE004509) hypothetical protein PA0742 [Pseudomonas aeruginosa PAO1]
                           102
                           99.01
                           99.99
                           0
                           498.0
     

     






      

          
GC ORFID: 48158How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0742Glimmer Score: 

          
Start: 105835Stop: 105527

          
Length: 309


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0742 translation of PA0742Homolog Bit Score 197.0

          
Other Homologs:  t_PA0742 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGACCCACGAGCTGCTCTACGGACTCTGCGCGCTCTACCTGCAGATGGCGCTGGCCTTCGCTCTCGCCTAC 
TACATGGTCGAACAGATGCAGCCTGCCAGCTTCATCGCCAGCCATGGCGCACTCGGCCTGGATACCTTCGTC 
TACTACAGCCTGGTGACCCTGACCACCGTGGGCTACGGCGACATCCAGGCGATCAACCCGCTGGCGCGCCTG 
CTGGCCGGCAGCGAAGGAGTGATCGGCGTCCTGTTCATCGCCCTCGCCGTGGCCCGCAGCCTGACCCTGATG 
AGCGACAGCGAGGAGGTCTGA