ViewGene
Locus Name:
GeneID:
Location:

GeneID:5154
TrivialName: PA14_72070
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72070
PAO1 Ortholog Locus:PA5461
Sequence Length:318
Protein Length:105
Start: 6424542
Stop: 6424859
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08846.1|AE004959_2 (AE004959) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 105/105 (100%), Positives = 105/105 (100%)
Sequence:
ATGAAACGTCTGCGCCTGATCGGTGCCGCTGCCCTGCTCGCCTGCGCCTCCAGCGCGTTCGCCAGCAGCTTC
GTGGTCACCACGGATACCCTGGTCCGCGCCACCGGCATGACCTCCAATGCCACTTCGGACATCACCAATTCC
TTCCGCGACGACAAGATCGTCCTCGAAGCGCGCGACGACGCCGCCAGCTTCGTCGCCAGCCAGGGCGACATC
CGCGGCTCGCACCTGGAAGCCGCACTGCGCCACATCCGTGGCAAGCTGCCGAGCCTGGCCGCCAACGACATG
CAACTGGCCCAGGCGATCCTGACCATCTGA
Translation:
MKRLRLIGAAALLACASSAFASSFVVTTDTLVRATGMTSNATSDITNSFRDDKIVLEARDDAASFVASQGDI
RGSHLEAALRHIRGKLPSLAANDMQLAQAILTI*
AnnotationID:5159GeneID:5154
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 05:05:29
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5461
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10308




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27452




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5154
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7562
                           PA5461_tr
                           translation of PA5461
                           105
                           99.99
                           99.99
                           0
                           503.0
     

     
     
194060
                           gb|AAG08846.1|AE004959_2
                           (AE004959) hypothetical protein PA5461 [Pseudomonas aeruginosa PAO1]
                           105
                           99.99
                           99.99
                           0
                           503.0
     

     
     
194062
                           gb|AAO58886.1|
                           (AE016875) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           105
                           60.95
                           74.28
                           0
                           300.0
     

     
     
194061
                           gb|AAN65786.1|AE016204_9
                           (AE016774) conserved hypothetical protein [Pseudomonas putida KT2440]
                           126
                           50.00
                           63.49
                           21
                           301.0
     

     






      

          
GC ORFID: 48156How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5461Glimmer Score: 

          
Start: 5688231Stop: 5688548

          
Length: 318


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5461 translation of PA5461Homolog Bit Score 198.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene2889 (ORF: BLASTX 118.0), t_PA5461 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAACGTCTGCGCCTGATCGGTGCCGCTGCCCTGCTCGCCTGCGCCTCCAGCGCGTTCGCCAGCAGCTTC 
GTGGTCACCACGGATACCCTGGTCCGCGCCACCGGCATGACCTCCAATGCCACTTCGGACATCACCAATTCC 
TTCCGCGACGACAAGATCGTCCTCGAAGCGCGCGACGACGCCGCCAGCTTCGTCGCCAGCCAGGGCGACATC 
CGCGGCTCGCACCTGGAAGCCGCACTGCGCCACATCCGTGGCAAGCTGCCGAGCCTGGCCGCCAACGACATG 
CAACTGGCCCAGGCGATCCTGACCATCTGA