ViewGene
Locus Name:
GeneID:
Location:

GeneID:5153
TrivialName: PA14_56360
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56360
PAO1 Ortholog Locus:PA4335
Sequence Length:309
Protein Length:102
Start: 5028523
Stop: 5028215
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07723.1|AE004850_1 (AE004850) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 101/102 (99%), Positives = 101/102 (99%)
Sequence:
ATGTGCGAACTCTATGTGAAAGCCGACCCGATCCTCTATGAATCGCGCTCGCGTTCCTTGCGCATCCGCGGG
GTGGTGACCACCCTGCGCCTGGAGAACCAGTTCTGGGACATCCTCCGGGAAATCGCCGAAGGCGAGGGCCTG
AGCACCAACCAGTTGATCACCAAGCTCTACGAGGAAGTGATGGACTATCGCGGCGAGGTGCTCAACTTCGCC
TCCTTCCTGCGTGTCAGTTGCACCCGCTACCTGGCGCAGCGGCGCGAGAAGGTCGCCGAGCTGAGCCTGGTC
GGCCAGCGCGCCCAGGCCTGA
Translation:
MCELYVKADPILYESRSRSLRIRGVVTTLRLENQFWDILREIAEGEGLSTNQLITKLYEEVMDYRGEVLNFA
SFLRVSCTRYLAQRREKVAELSLVGQRAQA*
AnnotationID:5158GeneID:5153
AnnotatorUID: diggins
Modification Date/Time: 2005-04-04 17:05:08
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4335
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10306




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27450




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36686




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5153_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5153
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7561
                           PA4335_tr
                           translation of PA4335
                           102
                           99.01
                           99.01
                           0
                           504.0
     

     
     
194058
                           gb|AAG07723.1|AE004850_1
                           (AE004850) hypothetical protein PA4335 [Pseudomonas aeruginosa PAO1]
                           102
                           99.01
                           99.01
                           0
                           504.0
     

     
     
194059
                           emb|CAD13943.1|
                           (AL646059) HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
                           134
                           38.05
                           54.47
                           32
                           252.0
     

     






      

          
GC ORFID: 48155How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4335Glimmer Score: 

          
Start: 4292199Stop: 4291891

          
Length: 309


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4335 translation of PA4335Homolog Bit Score 198.0

          
Other Homologs:  t_PA4335 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTGCGAACTCTATGTGAAAGCCGACCCGATCCTCTATGAATCGCGCTCGCGTTCCTTGCGCATCCGCGGG 
GTGGTGACCACCCTGCGCCTGGAGAACCAGTTCTGGGACATCCTCCGGGAAATCGCCGAAGGCGAGGGCCTG 
AGCACCAACCAGTTGATCACCAAGCTCTACGAGGAAGTGATGGACTATCGCGGCGAGGTGCTCAACTTCGCC 
TCCTTCCTGCGTGTCAGTTGCACCCGCTACCTGGCGCAGCGGCGCGAGAAGGTCGCCGAGCTGAGCCTGGTC 
GGCCAGCGCGCCCAGGCCTGA