ViewGene
Locus Name:
GeneID:
Location:

GeneID:5152
TrivialName: PA14_18180
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_18180
PAO1 Ortholog Locus:PA3566
Sequence Length:294
Protein Length:97
Start: 1560308
Stop: 1560015
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06954.1|AE004777_7 (AE004777) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 97/97 (100%), Positives = 97/97 (100%)
Sequence:
ATGAGCACACCCCTCACCCTGATCGCCACCATCACCGCCGCCCCCGGCCACGCCGAGGCCCTGGAACGCGAA
TTGCGCGCCCTGGTCGCCCCGTCGCGCGCCGAGGCTGGTTGCCTGCAGTACGACCTGCATCAGGACCGCCAC
GACTCCCACCTGTTCTACATGATCGAGCAGTGGCGCGACGACGCCGCCCTGGAGCGGCACCAGAACACCGAA
CACTTCCTGCGCTTCAGCCGCGGCAACGAAGCCCTGCTGCAGAACGTGAAGATCGACCAACTCTATCGCCTC
GCCTGA
Translation:
MSTPLTLIATITAAPGHAEALERELRALVAPSRAEAGCLQYDLHQDRHDSHLFYMIEQWRDDAALERHQNTE
HFLRFSRGNEALLQNVKIDQLYRLA*
AnnotationID:5157GeneID:5152
AnnotatorUID: diggins
Modification Date/Time: 2005-04-20 06:06:20
Gene Name:
Confidence Code:3
GeneProduct:putative Antibiotic biosynthesis monooxygenase
Cell Localization:()
Synonyms:PA3566
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(3) Antibiotic resistance and susceptibility
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03992
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam03992, ABM, Antibiotic biosynthesis monooxygenase
CD-Length = 64 residues, 100.0% aligned
Score = 67.5 bits (165), Expect = 3e-13
Identities = 26/64 (40%), Positives = 32/64 (50%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10304




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27448




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31976




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5152_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5152
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7560
                           PA3566_tr
                           translation of PA3566
                           97
                           99.99
                           99.99
                           0
                           503.0
     

     
     
194057
                           gb|AAG06954.1|AE004777_7
                           (AE004777) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           97
                           99.99
                           99.99
                           0
                           503.0
     

     






      

          
GC ORFID: 48154How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3566Glimmer Score: 

          
Start: 3393628Stop: 3393921

          
Length: 294


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3566 translation of PA3566Homolog Bit Score 198.0

          
Other Homologs:  t_PA3566 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCACACCCCTCACCCTGATCGCCACCATCACCGCCGCCCCCGGCCACGCCGAGGCCCTGGAACGCGAA 
TTGCGCGCCCTGGTCGCCCCGTCGCGCGCCGAGGCTGGTTGCCTGCAGTACGACCTGCATCAGGACCGCCAC 
GACTCCCACCTGTTCTACATGATCGAGCAGTGGCGCGACGACGCCGCCCTGGAGCGGCACCAGAACACCGAA 
CACTTCCTGCGCTTCAGCCGCGGCAACGAAGCCCTGCTGCAGAACGTGAAGATCGACCAACTCTATCGCCTC 
GCCTGA