ViewGene
Locus Name:
GeneID:
Location:

GeneID:5151
TrivialName: PA14_20250
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20250
PAO1 Ortholog Locus:PA3390
Sequence Length:303
Protein Length:100
Start: 1745158
Stop: 1745460
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06777.1|AE004760_5 (AE004760) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 97/100 (97%), Positives = 98/100 (98%)
Sequence:
GTGTACTGCATCTTTATCAAGACCCGCCTCAGGGCCGGCTGCGCCGAGGCTTTCATCGATGCCATCCAGGTC
AACGCCGCCGCTTCCGTGTCCACCGAGCCCGGCTGCCTGGTGTTCGACGTTTCCCGCGACCGACAGGACCCT
GACCTGGTCTATCTCTACGAGATCTATCGCGATGACGCGGCCTACGAGGCGCACACCCGCACCGCGCATTTC
CGCGACAGCCGGCCGTTGGTCGAGCCGCTGATCCTCGAACAGGAAGTCTTCGAAAGCGACGCGCTGGCGCTC
AATCCGCTGCGCTGA
Translation:
MYCIFIKTRLRAGCAEAFIDAIQVNAAASVSTEPGCLVFDVSRDRQDPDLVYLYEIYRDDAAYEAHTRTAHF
RDSRPLVEPLILEQEVFESDALALNPLR*
AnnotationID:5156GeneID:5151
AnnotatorUID: diggins
Modification Date/Time: 2005-08-21 17:05:20
Gene Name:
Confidence Code:3
GeneProduct:putative antibiotic biosynthesis monooxygenase
Cell Localization:()
Synonyms:PA3390
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(3) Antibiotic resistance and susceptibility
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03992
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam03992, ABM, Antibiotic biosynthesis monooxygenase.
CD-Length = 64 residues,  98.4% aligned
Score = 61.3 bits (149), Expect = 2e-11
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 1/64 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:15258




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27446




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32174




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5151_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5151
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7559
                           PA3390_tr
                           translation of PA3390
                           100
                           97.00
                           98.00
                           0
                           503.0
     

     
     
194055
                           gb|AAG06777.1|AE004760_5
                           (AE004760) hypothetical protein PA3390 [Pseudomonas aeruginosa PAO1]
                           100
                           96.00
                           98.00
                           0
                           500.0
     

     
     
194056
                           gb|AAN70279.1|AE016668_5
                           (AE016791) conserved hypothetical protein [Pseudomonas putida KT2440]
                           100
                           76.00
                           92.00
                           0
                           416.0
     

     






      

          
GC ORFID: 48153How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3390Glimmer Score: 

          
Start: 3208774Stop: 3208472

          
Length: 303


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3390 translation of PA3390Homolog Bit Score 198.0

          
Other Homologs:  t_PA3390 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGTACTGCATCTTTATCAAGACCCGCCTCAGGGCCGGCTGCGCCGAGGCTTTCATCGATGCCATCCAGGTC 
AACGCCGCCGCTTCCGTGTCCACCGAGCCCGGCTGCCTGGTGTTCGACGTTTCCCGCGACCGACAGGACCCT 
GACCTGGTCTATCTCTACGAGATCTATCGCGATGACGCGGCCTACGAGGCGCACACCCGCACCGCGCATTTC 
CGCGACAGCCGGCCGTTGGTCGAGCCGCTGATCCTCGAACAGGAAGTCTTCGAAAGCGACGCGCTGGCGCTC 
AATCCGCTGCGCTGA