ViewGene
Locus Name:
GeneID:
Location:

GeneID:5150
TrivialName: PA14_21630
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21630
PAO1 Ortholog Locus:PA3278
Sequence Length:300
Protein Length:99
Start: 1876166
Stop: 1876465
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06666.1|AE004750_4 (AE004750) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 99/99 (100%), Positives = 99/99 (100%)
Sequence:
ATGATCGGCTGGGGACGTGCCTGTATTGGCGTCGGGGGGCTGCTATTGCTGGGCCAGTTGCTGGGGGGCGCC
CTGCTGCTCGCGGACGACGGCGAAGCGACGCTGGCGGTCGAACACTTCTGGCAATTCGTCTTCCTGATCCCG
GCGATCCTGGTGGCACTGGGAATGTTCGTCCTGCAGCATCACGTGGGTTCCTTCGCCCAGTTGTACCGCCGG
CGTCTCGATGGCGCCTCCTACCTGCTGGTTTCCTGCGGCATCGCCCTGGTCCTGGGCAAGCTCTGCGTCCTG
CTGCTCGCCTGA
Translation:
MIGWGRACIGVGGLLLLGQLLGGALLLADDGEATLAVEHFWQFVFLIPAILVALGMFVLQHHVGSFAQLYRR
RLDGASYLLVSCGIALVLGKLCVLLLA*
AnnotationID:5155GeneID:5150
AnnotatorUID: diggins
Modification Date/Time: 2005-04-15 06:06:41
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA3278
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10300




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27444




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5150
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7558
                           PA3278_tr
                           translation of PA3278
                           99
                           99.99
                           99.99
                           0
                           504.0
     

     
     
194054
                           gb|AAG06666.1|AE004750_4
                           (AE004750) hypothetical protein PA3278 [Pseudomonas aeruginosa PAO1]
                           99
                           99.99
                           99.99
                           0
                           504.0
     

     






      

          
GC ORFID: 48152How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3278Glimmer Score: 

          
Start: 3077765Stop: 3077466

          
Length: 300


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3278 translation of PA3278Homolog Bit Score 198.0

          
Other Homologs:  t_PA3278 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCGGCTGGGGACGTGCCTGTATTGGCGTCGGGGGGCTGCTATTGCTGGGCCAGTTGCTGGGGGGCGCC 
CTGCTGCTCGCGGACGACGGCGAAGCGACGCTGGCGGTCGAACACTTCTGGCAATTCGTCTTCCTGATCCCG 
GCGATCCTGGTGGCACTGGGAATGTTCGTCCTGCAGCATCACGTGGGTTCCTTCGCCCAGTTGTACCGCCGG 
CGTCTCGATGGCGCCTCCTACCTGCTGGTTTCCTGCGGCATCGCCCTGGTCCTGGGCAAGCTCTGCGTCCTG 
CTGCTCGCCTGA