ViewGene

Locus Name:
GeneID:
Location:

GeneID:515
TrivialName: PA14_48170
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48170
PAO1 Ortholog Locus:PA1242
Sequence Length:1773
Protein Length:590
Start: 4291143
Stop: 4289371
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04631.1|AE004553_8 (AE004553) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 589/590 (99%), Positives = 589/590 (99%)
Sequence:
ATGCCGCTGCGCCGTGCCGTTTTCGCCATCCTTTTCGCGTCCCTGGGCAGTCCTTTGGTCGCCGCCGAAACA
CCCCTGCGCCTGGAGCGCCTGGAGCGCTGCGGCGATCTCCTGGCCAGCGAGCGGCAGGAGTGGTGCCTGCGC
GTGCGCGGCCTGGGTGCCGGCCTGCCGCGCCTGTTGCTGGACGGCCGCGAACTGCCGGCCACCGCCCTGCGG
CGCGAGGGCGACGGCCTGCGGCTCCGCCTGGACCGCCGTGGCCACGCCAGCGGTCCGCTTTGGCTGGAGCAG
GGCGGGCGCAGCAGCAATCCGGTATGGCTGACCCTGAACGGCAGCCATGTGCTCGCCGCCGGTCCCGACGAG
GTGGCGAAGAACATGGATGGCCTGACCACCTACGTCGACCTGGTCAGCCTGTTGATCGAGGAGAACCACGAC
GGTCGCCGGGAGGCCGAACGCCTGGCCGATAAATATGGCGCGCGGGTGGTCGGCGCGATCCCGCCGTTGAAC
CTCTACCAGTTGCGCCTGCCGGCGCGCGACCTCGTCCAGCGCGACGCGCTGGTCCTCCGCATCGGCAGCGAG
ACCAGCGTGGACGCCGTGGTGGTGGAGGAGTCCGCGCCGGAGAAGGGCGAGGAAACCGAGGCGGCGCGCCGG
CCCGTGGACAAGCCGGACAGCGACTCCGACGAGTGGGCGGCCAATCGTTTCATGGACGCGGTGAACTATTAC
CAGCGTCGGGTCCGCGCCCGCCAGGCCCCGCTGGAGACCCGCCCGGTGCGCATCGGGGTGATCGAGCGCGAC
GTCGACTTCGACGCCCCCGACTTCGCCGACTACCTCGGCCCCTGCAAGGCGCCCGCGCCGCGTACCTGCCTC
TACGCGCGCGATGCCGAACGTCCCGACAACCACGGTTCGACGGTCGCCGGCATCCTCGCCGCGCGCTGGGAC
CAGGGCGGCAACAGTGGCTTCCTGCGTGGGCTGGACCGCGCCAGCCAGGGTTTCGAAGTGATCGTCGAGCGC
AATTCCGACGCTGGCATCACGGCCAACGTCGCCGCTTCGGTGAACCTGGTGGAGGATGGCGTGCGGGTGCTC
AACTGGAGCTGGGGCATCCACCGCGTCGGCGCTCGCGACGTCGACGGCGACGAGGTGGATTCGCTGGTGCGC
TCGGGGATCGCCATGAGCGGCTACGAGGAGTTGCTCGAGGAGTTCTTCCTCTGGCTGCGCAAGGAGCATCCG
GACGTGCTGGTGGTCAACTCCGCCGGTAACGGCTCGTCCTACTCCGGTACCGACGAATACCGCCTGCCGTCC
TCCTTCGTCACCGAGCAGTTGCTGGTGGTGGGCGGCCACCAGCGCAGCGAGCGCCAAGGCCTGGCGGTGGAC
GACCCGGCCTACGCGGTCAAGCGCAGCACCTCGAACGTCGACATGCGGGTGGATGTCACCGCCGCCGCCTGT
ACCCATGCCTCGACCCTGGAGCGGGACGCGTGGGGCGAGGTGCACTGCGGCACCTCCTATGCCACGCCGATG
GTCGCCGGCACGGTCGCCGCCATGCTTTCCCTCAACCCGCGGCTGCGACCCGAGGAGATCCGCATGCTGCTC
CGGCGCAGCGCCATGACCATCGGCGGCGACTACGATTTCGAGCCGGCCGATGCCGAGGACCTCACCGCACCG
ATCCTGCCCTCGGAGCGCGGCTACCGCCTGGACCACCGTGACGTCGGCCGCTCGGCGCGGCTGGACATGCAG
AAAGCCCTGGACCTGGCGGTGAAGAGCCGCGAGCGCGTGCGCTGA
Translation:
MPLRRAVFAILFASLGSPLVAAETPLRLERLERCGDLLASERQEWCLRVRGLGAGLPRLLLDGRELPATALR
REGDGLRLRLDRRGHASGPLWLEQGGRSSNPVWLTLNGSHVLAAGPDEVAKNMDGLTTYVDLVSLLIEENHD
GRREAERLADKYGARVVGAIPPLNLYQLRLPARDLVQRDALVLRIGSETSVDAVVVEESAPEKGEETEAARR
PVDKPDSDSDEWAANRFMDAVNYYQRRVRARQAPLETRPVRIGVIERDVDFDAPDFADYLGPCKAPAPRTCL
YARDAERPDNHGSTVAGILAARWDQGGNSGFLRGLDRASQGFEVIVERNSDAGITANVAASVNLVEDGVRVL
NWSWGIHRVGARDVDGDEVDSLVRSGIAMSGYEELLEEFFLWLRKEHPDVLVVNSAGNGSSYSGTDEYRLPS
SFVTEQLLVVGGHQRSERQGLAVDDPAYAVKRSTSNVDMRVDVTAAACTHASTLERDAWGEVHCGTSYATPM
VAGTVAAMLSLNPRLRPEEIRMLLRRSAMTIGGDYDFEPADAEDLTAPILPSERGYRLDHRDVGRSARLDMQ
KALDLAVKSRERVR*
AnnotationID:524GeneID:515
AnnotatorUID: diggins
Modification Date/Time: 2005-02-22 09:09:22
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1242
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:1033
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18175
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37533
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:515_cdd.html
URL:
Homologs By Global Alignment
Gene ID:515

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
906 PA1242_tr translation of PA1242 590 99.83 99.83 0 3022.0
36749 gb|AAG04631.1|AE004553_8 (AE004553) hypothetical protein PA1242 [Pseudomonas aeruginosa PAO1] 590 99.83 99.83 0 3022.0
36750 gb|AAN69696.1|AE016605_6 (AE016789) conserved hypothetical protein [Pseudomonas putida KT2440] 593 66.94 78.24 27 1950.0
GC ORFID: 43517How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1242Glimmer Score:
Start: 662765Stop: 664537
Length: 1773
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1242 translation of PA1242Homolog Bit Score 1168.0
Other Homologs: t_PA1242 (ORF: GLIMMER)
GC ORF Sequence
ATGCCGCTGCGCCGTGCCGTTTTCGCCATCCTTTTCGCGTCCCTGGGCAGTCCTTTGGTCGCCGCCGAAACA
CCCCTGCGCCTGGAGCGCCTGGAGCGCTGCGGCGATCTCCTGGCCAGCGAGCGGCAGGAGTGGTGCCTGCGC
GTGCGCGGCCTGGGTGCCGGCCTGCCGCGCCTGTTGCTGGACGGCCGCGAACTGCCGGCCACCGCCCTGCGG
CGCGAGGGCGACGGCCTGCGGCTCCGCCTGGACCGCCGTGGCCACGCCAGCGGTCCGCTTTGGCTGGAGCAG
GGCGGGCGCAGCAGCAATCCGGTATGGCTGACCCTGAACGGCAGCCATGTGCTCGCCGCCGGTCCCGACGAG
GTGGCGAAGAACATGGATGGCCTGACCACCTACGTCGACCTGGTCAGCCTGTTGATCGAGGAGAACCACGAC
GGTCGCCGGGAGGCCGAACGCCTGGCCGATAAATATGGCGCGCGGGTGGTCGGCGCGATCCCGCCGTTGAAC
CTCTACCAGTTGCGCCTGCCGGCGCGCGACCTCGTCCAGCGCGACGCGCTGGTCCTCCGCATCGGCAGCGAG
ACCAGCGTGGACGCCGTGGTGGTGGAGGAGTCCGCGCCGGAGAAGGGCGAGGAAACCGAGGCGGCGCGCCGG
CCCGTGGACAAGCCGGACAGCGACTCCGACGAGTGGGCGGCCAATCGTTTCATGGACGCGGTGAACTATTAC
CAGCGTCGGGTCCGCGCCCGCCAGGCCCCGCTGGAGACCCGCCCGGTGCGCATCGGGGTGATCGAGCGCGAC
GTCGACTTCGACGCCCCCGACTTCGCCGACTACCTCGGCCCCTGCAAGGCGCCCGCGCCGCGTACCTGCCTC
TACGCGCGCGATGCCGAACGTCCCGACAACCACGGTTCGACGGTCGCCGGCATCCTCGCCGCGCGCTGGGAC
CAGGGCGGCAACAGTGGCTTCCTGCGTGGGCTGGACCGCGCCAGCCAGGGTTTCGAAGTGATCGTCGAGCGC
AATTCCGACGCTGGCATCACGGCCAACGTCGCCGCTTCGGTGAACCTGGTGGAGGATGGCGTGCGGGTGCTC
AACTGGAGCTGGGGCATCCACCGCGTCGGCGCTCGCGACGTCGACGGCGACGAGGTGGATTCGCTGGTGCGC
TCGGGGATCGCCATGAGCGGCTACGAGGAGTTGCTCGAGGAGTTCTTCCTCTGGCTGCGCAAGGAGCATCCG
GACGTGCTGGTGGTCAACTCCGCCGGTAACGGCTCGTCCTACTCCGGTACCGACGAATACCGCCTGCCGTCC
TCCTTCGTCACCGAGCAGTTGCTGGTGGTGGGCGGCCACCAGCGCAGCGAGCGCCAAGGCCTGGCGGTGGAC
GACCCGGCCTACGCGGTCAAGCGCAGCACCTCGAACGTCGACATGCGGGTGGATGTCACCGCCGCCGCCTGT
ACCCATGCCTCGACCCTGGAGCGGGACGCGTGGGGCGAGGTGCACTGCGGCACCTCCTATGCCACGCCGATG
GTCGCCGGCACGGTCGCCGCCATGCTTTCCCTCAACCCGCGGCTGCGACCCGAGGAGATCCGCATGCTGCTC
CGGCGCAGCGCCATGACCATCGGCGGCGACTACGATTTCGAGCCGGCCGATGCCGAGGACCTCACCGCACCG
ATCCTGCCCTCGGAGCGCGGCTACCGCCTGGACCACCGTGACGTCGGCCGCTCGGCGCGGCTGGACATGCAG
AAAGCCCTGGACCTGGCGGTGAAGAGCCGCGAGCGCGTGCGCTGA