ViewGene
Locus Name:
GeneID:
Location:

GeneID:5148
TrivialName: PA14_72500
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72500
PAO1 Ortholog Locus:PA5494
Sequence Length:291
Protein Length:96
Start: 6459514
Stop: 6459804
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08879.1|AE004962_3 (AE004962) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 96/96 (100%), Positives = 96/96 (100%)
Sequence:
ATGCGTACGCTGAACCGCTTGATGCTCGCCGGACTGCTGGCGTTCGCCCCGCTCGTCGCGATGGCGGCGGAC
GACGACGCGCCCTCCGGCGAGCCCGACGTAACCATCCGCCAGGAGGGCGACAAGACCATCCAGGAATACCGC
GTGAATGGCTTCCTCTACGCCATCAAGGTGGTTCCCAAGCATGGCAAACCCTATTTCCTGGTCCGCGCCGAC
GGCAGCGATGGCAACTTCATTCGCTCCGACCAGCCGGACAAGCTGATTCCACAATGGGAGATCTTCAGCTGG
TGA
Translation:
MRTLNRLMLAGLLAFAPLVAMAADDDAPSGEPDVTIRQEGDKTIQEYRVNGFLYAIKVVPKHGKPYFLVRAD
GSDGNFIRSDQPDKLIPQWEIFSW*
AnnotationID:5153GeneID:5148
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 08:08:34
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5494
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.







   
Genomic Context:






   
Comment:


















    ReferenceID:10296




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27440




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5148
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7556
                           PA5494_tr
                           translation of PA5494
                           96
                           99.99
                           99.99
                           0
                           505.0
     

     
     
193998
                           gb|AAG08879.1|AE004962_3
                           (AE004962) hypothetical protein PA5494 [Pseudomonas aeruginosa PAO1]
                           96
                           99.99
                           99.99
                           0
                           505.0
     

     
     
193999
                           gb|AAN65756.1|AE016201_8
                           (AE016774) conserved hypothetical protein [Pseudomonas putida KT2440]
                           96
                           77.08
                           86.45
                           1
                           393.0
     

     
     
194000
                           gb|AAO53890.1|
                           (AE016857) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           96
                           75.00
                           85.41
                           1
                           387.0
     

     






      

          
GC ORFID: 48150How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5494Glimmer Score: 

          
Start: 5723203Stop: 5723493

          
Length: 291


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5494 translation of PA5494Homolog Bit Score 199.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3185 (ORF: BLASTX 152.0), t_PA5494 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTACGCTGAACCGCTTGATGCTCGCCGGACTGCTGGCGTTCGCCCCGCTCGTCGCGATGGCGGCGGAC 
GACGACGCGCCCTCCGGCGAGCCCGACGTAACCATCCGCCAGGAGGGCGACAAGACCATCCAGGAATACCGC 
GTGAATGGCTTCCTCTACGCCATCAAGGTGGTTCCCAAGCATGGCAAACCCTATTTCCTGGTCCGCGCCGAC 
GGCAGCGATGGCAACTTCATTCGCTCCGACCAGCCGGACAAGCTGATTCCACAATGGGAGATCTTCAGCTGG 
TGA