ViewGene
Locus Name:
GeneID:
Location:

GeneID:5147
TrivialName: PA14_72090
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72090
PAO1 Ortholog Locus:PA5463
Sequence Length:333
Protein Length:110
Start: 6425306
Stop: 6425638
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08848.1|AE004959_4 (AE004959) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 110/111 (99%), Positives = 110/111 (99%), Gaps = 1/111 (0%)
Sequence:
ATGCGCCGTAGCTCCATGCGTCATAGCCCCCTGTTCGCCGCCCTGCTGCTGGCGCTCTGCGCCACGGCGGAA
GCACGCTCGGTGGTCGCGACCAGCAATATCATCGTCCGCGCCCTCGACCGCAGCATCGACTTCACTTCCGAC
ACCACCACTTCCGTGCGCGACATGAAAGTGGTCACCGAGGCGCGCGACGACGCCGCCAGTTTCGTCGCCAGC
GACGGCGCCATTCGCGGCGCCCAGCTGGAAGCCGCGATGCGGACCCTGCGCAGCCGTCTGCCGGAAGCCCGC
GAAGCCTCCGACCAGGTACTTGCCGAAGCCATTCTCGCCCTGTGA
Translation:
MRRSSMRHSPLFAALLLALCATAEARSVVATSNIIVRALDRSIDFTSDTTTSVRDMKVVTEARDDAASFVAS
DGAIRGAQLEAAMRTLRSRLPEAREASDQVLAEAILAL*
AnnotationID:5152GeneID:5147
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 05:05:15
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5463
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10294




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27438




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5147
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7555
                           PA5463_tr
                           translation of PA5463
                           111
                           99.09
                           99.09
                           1
                           507.0
     

     
     
193996
                           gb|AAG08848.1|AE004959_4
                           (AE004959) hypothetical protein PA5463 [Pseudomonas aeruginosa PAO1]
                           111
                           99.09
                           99.09
                           1
                           507.0
     

     
     
193997
                           gb|AAN65784.1|AE016204_7
                           (AE016774) conserved hypothetical protein [Pseudomonas putida KT2440]
                           112
                           70.53
                           76.78
                           8
                           342.0
     

     






      

          
GC ORFID: 48149How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5463Glimmer Score: 

          
Start: 5688995Stop: 5689327

          
Length: 333


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5463 translation of PA5463Homolog Bit Score 199.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene2891 (ORF: BLASTX 128.0), t_PA5463 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCCGTAGCTCCATGCGTCATAGCCCCCTGTTCGCCGCCCTGCTGCTGGCGCTCTGCGCCACGGCGGAA 
GCACGCTCGGTGGTCGCGACCAGCAATATCATCGTCCGCGCCCTCGACCGCAGCATCGACTTCACTTCCGAC 
ACCACCACTTCCGTGCGCGACATGAAAGTGGTCACCGAGGCGCGCGACGACGCCGCCAGTTTCGTCGCCAGC 
GACGGCGCCATTCGCGGCGCCCAGCTGGAAGCCGCGATGCGGACCCTGCGCAGCCGTCTGCCGGAAGCCCGC 
GAAGCCTCCGACCAGGTACTTGCCGAAGCCATTCTCGCCCTGTGA