ViewGene
Locus Name:
GeneID:
Location:

GeneID:5146
TrivialName: PA14_61840
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61840
PAO1 Ortholog Locus:PA4674
Sequence Length:306
Protein Length:101
Start: 5514501
Stop: 5514196
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08061.1|AE004881_4 (AE004881) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 99/101 (98%), Positives = 100/101 (99%)
Sequence:
ATGGCTACCAATGGTATGCGCCCCATCCATCCTGGGGAAATATTGCGCGATGAGTTTCTGATGGAGTTGGAT
ATCTCTCCAGCTGCTCTAGCACGCGCTTTGAAAGTCTCCGCTCCGACAGTGAACGATATCGTTCGTGAGCAG
CGTGGTATCTCCGCAGATATGGCGATTCGTCTGGGGCGTTACTTTGATACGTCCGCTCAGTTCTGGATGAAT
CTCCAGAGTGAGTACTCGTTAGCAACTGCTTATGCGGCGAATGGCGAGCAGATCGAACATGAGATTGAGCCG
CTGCTTGCTCACGGATAG
Translation:
MATNGMRPIHPGEILRDEFLMELDISPAALARALKVSAPTVNDIVREQRGISADMAIRLGRYFDTSAQFWMN
LQSEYSLATAYAANGEQIEHEIEPLLAHG*
AnnotationID:5151GeneID:5146
AnnotatorUID: diggins
Modification Date/Time: 2005-05-24 12:12:11
Gene Name:
Confidence Code:3
GeneProduct:putative virulence-associated protein
Cell Localization:()
Synonyms:vapI
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:putative antidote protein
Functional Category Confidence Code:5
COGs:COG3093
Secondary Functional Category(ies):transcriptional regulator
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67206.1|AE016347_7 (AE016779) antidote protein, putative [Pseudomonas putida KT2440]
          Length = 99

 Score =  112 bits (281), Expect = 3e-25
 Identities = 55/99 (55%), Positives = 74/99 (74%)

>gb|AAO53760.1| (AE016856) virulence-associated protein, putative [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 101

 Score =  111 bits (277), Expect = 9e-25
 Identities = 54/100 (54%), Positives = 73/100 (73%), Gaps = 1/100 (1%)

>gb|AAB00945.1| (L31763) virulence-associated protein I [Dichelobacter nodosus]
          Length = 108

 Score = 90.5 bits (223), Expect = 2e-18
 Identities = 45/79 (56%), Positives = 57/79 (72%)








 
Structural Features:
COG3093, VapI, Plasmid maintenance system antidote protein
CD-Length = 104 residues,  94.2% aligned
Score =  115 bits (290), Expect = 9e-28
Identities = 43/100 (43%), Positives = 62/100 (62%), Gaps = 2/100 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10292




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27436




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37611




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5146_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5146
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7554
                           PA4674_tr
                           translation of PA4674
                           101
                           98.01
                           99.00
                           0
                           505.0
     

     
     
193993
                           gb|AAG08061.1|AE004881_4
                           (AE004881) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           101
                           98.01
                           99.00
                           0
                           505.0
     

     
     
193994
                           gb|AAN67206.1|AE016347_7
                           (AE016779) antidote protein, putative [Pseudomonas putida KT2440]
                           101
                           54.45
                           73.26
                           2
                           281.0
     

     
     
193995
                           gb|AAO53760.1|
                           (AE016856) virulence-associated protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           102
                           52.94
                           71.56
                           2
                           276.0
     

     






      

          
GC ORFID: 48148How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4674Glimmer Score: 

          
Start: 4778181Stop: 4777876

          
Length: 306


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4674 translation of PA4674Homolog Bit Score 199.0

          
Other Homologs:  

          
GC ORF Sequence

           
ATGGCTACCAATGGTATGCGCCCCATCCATCCTGGGGAAATATTGCGCGATGAGTTTCTGATGGAGTTGGAT 
ATCTCTCCAGCTGCTCTAGCACGCGCTTTGAAAGTCTCCGCTCCGACAGTGAACGATATCGTTCGTGAGCAG 
CGTGGTATCTCCGCAGATATGGCGATTCGTCTGGGGCGTTACTTTGATACGTCCGCTCAGTTCTGGATGAAT 
CTCCAGAGTGAGTACTCGTTAGCAACTGCTTATGCGGCGAATGGCGAGCAGATCGAACATGAGATTGAGCCG 
CTGCTTGCTCACGGATAG