ViewGene
Locus Name:
GeneID:
Location:

GeneID:5145
TrivialName: PA14_20770
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20770
PAO1 Ortholog Locus:PA3347
Sequence Length:306
Protein Length:101
Start: 1787554
Stop: 1787859
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06735.1|AE004757_4 (AE004757) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 101/101 (100%), Positives = 101/101 (100%)
Sequence:
ATGGCCATCACTGCGCTGCCCTCGGCCGATGGGCAAGAGTTGACCATCCAGATCCAGGGGCGCTTCGACTTC
GGGGCCCATCAGGATTTCCGCGACGCCTACGAGCGCGTCGCGATCACTCCGCGACGCTATGTCGTCGACCTG
CGCAACGCCACCTACCTGGACAGCTCGGCCCTCGGCATGCTCCTGCTGCTGCGCGACCACGCCGGCGGCGAG
AACGCGCAGATCAGCCTGGCGAACTGCAGCCCGGAAGTGCGCAAGATCCTCGCCATCTCCAACTTCGAGCAG
TTGTTCAAGATCAGCTGA
Translation:
MAITALPSADGQELTIQIQGRFDFGAHQDFRDAYERVAITPRRYVVDLRNATYLDSSALGMLLLLRDHAGGE
NAQISLANCSPEVRKILAISNFEQLFKIS*
AnnotationID:5150GeneID:5145
AnnotatorUID: diggins
Modification Date/Time: 2005-08-23 22:10:21
Gene Name:
Confidence Code:3
GeneProduct:putative anti-sigma F factor antagonist
Cell Localization:()
Synonyms:PA3347
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:STAS domain protein
Functional Category Confidence Code:5
COGs:pfam01740,COG1366
Secondary Functional Category(ies):signal transduction mechanisms
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69942.1|AE016632_13 (AE016790) anti-sigma F factor antagonist, putative [Pseudomonas
           putida KT2440]
          Length = 101

 Score =  129 bits (324), Expect = 3e-30
 Identities = 65/101 (64%), Positives = 80/101 (79%)

>gb|AAO55481.1| (AE016862) STAS domain protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 100

 Score =  124 bits (311), Expect = 1e-28
 Identities = 62/101 (61%), Positives = 78/101 (77%), Gaps = 1/101 (0%)








 
Structural Features:
pfam01740, STAS, STAS domain. 
CD-Length = 106 residues,  84.0% aligned
Score = 48.3 bits (115), Expect = 1e-07
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 2/89 (2%)

COG1366, SpoIIAA, Anti-anti-sigma regulatory factor 
(antagonist of anti-sigma factor) 
[Signal transduction mechanisms]
CD-Length = 117 residues,  87.2% aligned
Score = 60.8 bits (147), Expect = 2e-11
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 3/103 (2%)







   
Genomic Context:






   
Comment:


















    ReferenceID:10290




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27434




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32214




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5145_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5145
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7553
                           PA3347_tr
                           translation of PA3347
                           101
                           99.99
                           99.99
                           0
                           506.0
     

     
     
193990
                           gb|AAG06735.1|AE004757_4
                           (AE004757) hypothetical protein PA3347 [Pseudomonas aeruginosa PAO1]
                           101
                           99.99
                           99.99
                           0
                           506.0
     

     
     
193991
                           gb|AAN69942.1|AE016632_13
                           (AE016790) anti-sigma F factor antagonist, putative [Pseudomonas putida KT2440]
                           101
                           64.35
                           79.20
                           0
                           324.0
     

     
     
193992
                           gb|AAO55481.1|
                           (AE016862) STAS domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           103
                           61.16
                           76.69
                           5
                           314.0
     

     






      

          
GC ORFID: 48147How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3347Glimmer Score: 

          
Start: 3166378Stop: 3166073

          
Length: 306


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3347 translation of PA3347Homolog Bit Score 199.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7923 (ORF: BLASTX 124.0)

          
GC ORF Sequence

           
ATGGCCATCACTGCGCTGCCCTCGGCCGATGGGCAAGAGTTGACCATCCAGATCCAGGGGCGCTTCGACTTC 
GGGGCCCATCAGGATTTCCGCGACGCCTACGAGCGCGTCGCGATCACTCCGCGACGCTATGTCGTCGACCTG 
CGCAACGCCACCTACCTGGACAGCTCGGCCCTCGGCATGCTCCTGCTGCTGCGCGACCACGCCGGCGGCGAG 
AACGCGCAGATCAGCCTGGCGAACTGCAGCCCGGAAGTGCGCAAGATCCTCGCCATCTCCAACTTCGAGCAG 
TTGTTCAAGATCAGCTGA