ViewGene

Locus Name:
GeneID:
Location:

GeneID:5143
TrivialName: PA14_36850
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36850
PAO1 Ortholog Locus:PA2143
Sequence Length:288
Protein Length:95
Start: 3285370
Stop: 3285083
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05531.1|AE004641_10 (AE004641) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 94/95 (98%), Positives = 94/95 (98%)
Sequence:
ATGAAACGCGACTGGGGGTTGATCAGGGATCTGCTGGAGCATCTGGAAAGCCTTGGCTTCGGCCAGCACTGG
GAAGCGCGCGAGCTGCCCGGTCATTGCCGCGAGGCGGTGGCCTACCACTTGCAGTTGCTCAACCAGGCGCAA
CTGCTCTGCGGCAGCGTCCAGCATTCCTGGACCGGCCAGGAGCACTGGGTGGTCCACCACCTGACCCTGGCC
GGCCACGACCTGCTCGACCGCCTGCGCCAGGAAAGCGCGGCGGCCGCCGTGCCGGTACGCAAGAGCGCCTGA
Translation:
MKRDWGLIRDLLEHLESLGFGQHWEARELPGHCREAVAYHLQLLNQAQLLCGSVQHSWTGQEHWVVHHLTLA
GHDLLDRLRQESAAAAVPVRKSA*
AnnotationID:5148GeneID:5143
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 11:11:52
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2143
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:10286
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27430
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5143

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7551 PA2143_tr translation of PA2143 95 98.94 98.94 0 507.0
193988 gb|AAG05531.1|AE004641_10 (AE004641) hypothetical protein PA2143 [Pseudomonas aeruginosa PAO1] 95 98.94 98.94 0 507.0
GC ORFID: 48145How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2143Glimmer Score:
Start: 1668544Stop: 1668831
Length: 288
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2143 translation of PA2143Homolog Bit Score 199.0
Other Homologs: t_PA2143 (ORF: GLIMMER)
GC ORF Sequence
ATGAAACGCGACTGGGGGTTGATCAGGGATCTGCTGGAGCATCTGGAAAGCCTTGGCTTCGGCCAGCACTGG
GAAGCGCGCGAGCTGCCCGGTCATTGCCGCGAGGCGGTGGCCTACCACTTGCAGTTGCTCAACCAGGCGCAA
CTGCTCTGCGGCAGCGTCCAGCATTCCTGGACCGGCCAGGAGCACTGGGTGGTCCACCACCTGACCCTGGCC
GGCCACGACCTGCTCGACCGCCTGCGCCAGGAAAGCGCGGCGGCCGCCGTGCCGGTACGCAAGAGCGCCTGA