ViewGene
Locus Name:
GeneID:
Location:

GeneID:5142
TrivialName: PA14_51610
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51610
PAO1 Ortholog Locus:PA0980
Sequence Length:285
Protein Length:94
Start: 4587609
Stop: 4587325
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP82951.1| (AY273870) conserved hypothetical protein [Pseudomonas aeruginosa]
Identities = 94/94 (100%), Positives = 94/94 (100%)
Sequence:
ATGTTGTATTTTTCTTGCAGTATGAAGATGGGTGGTTGGGTCGGATATAGGTACTTCTCTCTATTTTCTTTA
ATTGCTCTCATCTATGGGTGTGTCGGTGGTGGAGGTGGATCGGATGAGATTGGGCAGCACTGCTTTGAGAGA
GAGCAAAAGCTTTCCGGAGTTAATGATAATGAAGAGGGGAGTGTGAGGTTGAATCGGCTGAACTGCGATCCA
ATTGAAGGTCGTGTTCTTGAATCAGAGAAGCTGATAAGAAAGCCGCCCAATGAGCTGGGTATTCACTGA
Translation:
MLYFSCSMKMGGWVGYRYFSLFSLIALIYGCVGGGGGSDEIGQHCFEREQKLSGVNDNEEGSVRLNRLNCDP
IEGRVLESEKLIRKPPNELGIH*
AnnotationID:5147GeneID:5142
AnnotatorUID: danlee
Modification Date/Time: 2005-08-26 15:03:14
Gene Name:RS06
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0980
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10284




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27428




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5142
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
193985
                           gb|AAP82951.1|
                           (AY273870) conserved hypothetical protein [Pseudomonas aeruginosa]
                           94
                           99.99
                           99.99
                           0
                           508.0
     

     
     
7550
                           PA0980_tr
                           translation of PA0980
                           94
                           97.87
                           97.87
                           0
                           498.0
     

     
     
193986
                           gb|AAG04369.1|AE004531_6
                           (AE004531) hypothetical protein PA0980 [Pseudomonas aeruginosa PAO1]
                           94
                           97.87
                           97.87
                           0
                           498.0
     

     
     
193987
                           gb|AAP94689.1|
                           (AY258138) hypothetical protein [Pseudomonas aeruginosa]
                           94
                           94.68
                           96.80
                           0
                           483.0
     

     






      

          
GC ORFID: 48144How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RS06Glimmer Score: 

          
Start: 366298Stop: 366582

          
Length: 285


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_RS06 94 Homolog: PA0980 / Hypothetical protein / P. aeruginosa / PAO1 (AAG04369) translation of RS06Homolog Bit Score 200.0

          
Other Homologs:  t_PA0980 (ORF: BLASTX 196.0)

          
GC ORF Sequence

           
ATGTTGTATTTTTCTTGCAGTATGAAGATGGGTGGTTGGGTCGGATATAGGTACTTCTCTCTATTTTCTTTA 
ATTGCTCTCATCTATGGGTGTGTCGGTGGTGGAGGTGGATCGGATGAGATTGGGCAGCACTGCTTTGAGAGA 
GAGCAAAAGCTTTCCGGAGTTAATGATAATGAAGAGGGGAGTGTGAGGTTGAATCGGCTGAACTGCGATCCA 
ATTGAAGGTCGTGTTCTTGAATCAGAGAAGCTGATAAGAAAGCCGCCCAATGAGCTGGGTATTCACTGA